Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: LBA1 AT5G47010

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Description

RNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:834747]

Gene Synonyms

ATUPF1, LOW-LEVEL BETA-AMYLASE 1, MQD22.15, MQD22_15, UPF1

Location

Chromosome 5: 19,071,824-19,079,453 forward strand.

About this gene

This gene has 1 transcript (splice variant), 190 orthologues and 18 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
LBA1-201	AT5G47010.1	4547	1254aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178USW1 Q9FJR0	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Plant Compara

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data