Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT4G39830

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Description

Cupredoxin superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:830142]

Gene Synonyms

T5J17.9

Location

Chromosome 4: 18,478,890-18,481,343 forward strand.

About this gene

This gene has 4 transcripts (splice variants), 316 orthologues and 40 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT4G39830-201	AT4G39830.1	2121	582aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178USD6 O65670	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT4G39830-203	AT4G39830.2	2186	487aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B4N8	-	-
AT4G39830-204	AT4G39830.4	2108	474aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B4M6	-	-
AT4G39830-202	AT4G39830.3	2008	485aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B4N7	-	-

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Plant Compara

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data