Transcript: scaffold_104775.1 UBC20-201
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UBC20-201 scaffold_104775.1 585 180aa Gene/transcipt that contains an open reading frame (ORF). Protein coding
D7KG03 A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.html Ensembl Canonical,
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{"url":"/Arabidopsis_lyrata/Component/Transcript/Sequence_cDNA/sequence?g=scaffold_104775.1;r=1%3A26364258-26365556;t=scaffold_104775.1;db=core;time=1754537595695.695;adorn=only","provisional":{"legend":{"codons":{"c1":{"config":"c1","label":null,"text":"Alternating codons","class":"c1","default":"#fff9af"},"c0":{"default":"#ffffff","config":"c0","label":null,"text":"Alternating codons","class":"c0"}},"_messages":[],"exons":{"exon1":{"config":"exon1","label":"#1044ee","class":"e1","text":"Another exon","default":null},"exon0":{"default":null,"text":"An exon","class":"e0","label":"#333333","config":"exon0"}},"other":{"utr":{"class":"cu","text":"UTR","config":"utr","label":null,"default":"#ffdf33"}}},"flourishes":{},"seq":[{"style":[9]},-8,{"style":[9,-44,0]},{"style":[1,-21,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[5,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[5,3,-2,5,-2,3,-2,5,-2,3,-2,5,-1,8,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,5,-2,3,-2,5,-2,3,-2,5]},{"style":[5,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5,-2,3,-2,5]},-2,{"style":[5,10,-2,5,-2,10,-2,5,-2,10,-2,5,-2,10,-2,5,-2,10,-2,5,-2,10,-2,4,8,-1,2,-2,8,-2,2,-2,8,-2,2,-2,8,-2,2,-2,8]},{"style":[4,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,-2,4,-2,2,10,-1,11,-2,10,-2,11,-2,10,-2,11,-2,10,-2,11]},{"style":[11,10,-2,11,-2,10,-2,11,-2,10,-2,11,-2,10,-2,11,-2,10,-2,11,-2,10,-2,11,-2,10,2,7,4,-2,7,-2,4,-2,7,-2,4,-2,7,-2,4]},{"style":[8,2,-2,8,-2,2,-2,8,-2,2,-2,8,-2,2,-2,8,-2,6,-19,9,0]},{"style":[9]},-8,{"style":[9,-44,0]},{"style":[9]},-8,{"style":[9,-44,0]}],"ref":{"style":[[0,""],[0,"background-color:#ffdf33;color:#333333"],[20,"f9af;color:#1044ee"],[12,"333333"],[-11,"fff;color:#1044ee"],[11,"333333"],[-32,"color:#1044ee;background-color:#ffdf33"],[34,"f9af"],[1,"fff"],[-28,"333333"],[5,"3;background-color:#fff9af"],[23,"fff"]]},"expect":["variants","variants"]}}
1 TTCGATTAAGAAAGCGAAAGTGATGGCCGCCGTAAATGGGTATCAGGGAAATACTCCGGC 60
......................ATGGCCGCCGTAAATGGGTATCAGGGAAATACTCCGGC 38
......................-M--A--A--V--N--G--Y--Q--G--N--T--P--A 13
61 AGATCCTCCGGCGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAG 120
39 AGATCCTCCGGCGTCTAATGGATCAAAACAACCTGCGGCTCCGACCAAGACTGTTGACAG 98
13 --D--P--P--A--S--N--G--S--K--Q--P--A--A--P--T--K--T--V--D--S 33
121 CCAATCTGTTCTCAAGAGGCTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCC 180
99 CCAATCTGTTCTCAAGAGGCTGCAATCTGAATTGATGGGCTTGATGATGGGCGGTGGTCC 158
33 --Q--S--V--L--K--R--L--Q--S--E--L--M--G--L--M--M--G--G--G--P 53
181 AGGAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGG 240
159 AGGAATATCGGCTTTCCCTGAGGAAGACAACATATTCTGCTGGAAAGGGACAATAACAGG 218
53 --G--I--S--A--F--P--E--E--D--N--I--F--C--W--K--G--T--I--T--G 73
241 AAGCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTTTCCAATGA 300
219 AAGCAAAGATACTGTGTTTGAAGGAACTGAGTACAGACTCTCACTCTCTTTTTCCAATGA 278
73 --S--K--D--T--V--F--E--G--T--E--Y--R--L--S--L--S--F--S--N--D 93
301 TTATCCTTTCAAACCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGA 360
279 TTATCCTTTCAAACCTCCAAAGGTTAAGTTTGAGACATGTTGCTTCCACCCCAATGTTGA 338
93 --Y--P--F--K--P--P--K--V--K--F--E--T--C--C--F--H--P--N--V--D 113
361 TGTCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTATGATGT 420
339 TGTCTATGGCAATATCTGCTTAGACATTCTTCAGGATAAGTGGTCATCTGCTTATGATGT 398
113 --V--Y--G--N--I--C--L--D--I--L--Q--D--K--W--S--S--A--Y--D--V 133
421 CAGGACAATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATT 480
399 CAGGACAATACTACTATCGATTCAGAGCCTCCTGGGAGAACCGAACATCAGTTCACCATT 458
133 --R--T--I--L--L--S--I--Q--S--L--L--G--E--P--N--I--S--S--P--L 153
481 GAACACTCAAGCAGCTCAGCTCTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAA 540
459 GAACACTCAAGCAGCTCAGCTCTGGAGTAACCAAGAAGAGTACAGGAAGATGGTTGAGAA 518
153 --N--T--Q--A--A--Q--L--W--S--N--Q--E--E--Y--R--K--M--V--E--K 173
541 GCTCTACAAGCCTCCCAGTGCATGATTTCTGCAAGCTGTTCTGAT 585
519 GCTCTACAAGCCTCCCAGTGCATGA.................... 543
173 --L--Y--K--P--P--S--A--*-.................... 180
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