Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Ensembl Plants is produced in collaboration with Gramene

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Transcript: scaffold_102578.1

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Description

MA3 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:D7KLU9]

Location

Chromosome 1: 10,031,229-10,033,519 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 26 domains and features.

Gene

This transcript is a product of gene scaffold_102578.1 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
-	scaffold_102578.1	2120	692aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	D7KLU9	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Exons

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Download sequence

Exons/ Introns

Translated sequence
Flanking sequence
Intron sequence
UTR

Markup

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No.	Exon / Intron	Start	End	Start Phase	End Phase	Length	Sequence
	5' upstream sequence						..........atggtgattgattaaatcgtgtgacaatcgaaaagttgaggacttgcaag
1	scaffold_102578.1.exon1	10,031,229	10,031,390	-	1	162	GATTCGAGAGAGAGTCTAAAATGGAGCACCAAGAAGTTGCTGATTCGAAAACGGATCCTC TTTGCATTTCTCAATTGAAAATATCTTCTTCTCTCGACCCATTGCCACAGGCGAACATGA CAGCGGATTTATTGAAGAGTCATAGACATTCACCTATAAAAG
	Intron 1-2	10,031,391	10,031,471			81	gtatctcttttttacttcctctgga..........ttagagaacttttctttctatgcag
2	scaffold_102578.1.exon2	10,031,472	10,031,545	1	0	74	TGCAAGGGAGTGAAGAAACTTGGGGAGTAGAAGATGATGATGACCTCACTGACCCTAATT TTGATACCGTTGAG
	Intron 2-3	10,031,546	10,031,635			90	gtattcatcactttatatgtctctg..........gagatttaacttctttttccatcag
3	scaffold_102578.1.exon3	10,031,636	10,033,519	0	-	1,884	GGCAATGGACATTCAGATCCAACTAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG AAGGCCACGGTAATTGTGGAGGAATACTTTGGCACCAATGATGTTGTCTCAGTTGCTAAT GAACTAAAGGAGCTTGGAATGCCTGAGTACCGTTATTATTTTGTCAAGAAATTAGTCTCC ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTGCTGTCTACGCTT TATGCCGACGTCATTGATCCCCCGGAAGTTTACAGAGGTTTTAACAAACTGGTGGCTTCT GCTGATGATTTATCTGTAGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT CGGGCAATTGTTGACGACATTCTTCCACCTGCGTTTCTGAAGAAACAAATGAAATTGCTA CCAGATAACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCCGAGAAGAGCTATCTAGCCACT CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG GATGTGAAAGCAAGAATAAACGACTTGTTGAAAGAGTATGTCATGAGTGGAGACAAAGAA GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCACCATGAGATTGTCAAA CGAGCACTGATTATGGCAATGGAAAGGCGAAAAGCTGAAGTCAGGCTGCTAGATCTGTTA AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAAGTAACAAAAGGGTTTAGCAGA ATCATTGATTCAATTGAAGATTTGTCTCTTGACATACCAGATGCACGCCGTATATTACAG TCTTTCATCTCTAAAGCGGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC TCCGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT ACTCTTGGTTTCCCTCCAAAAGATGTCAGAAACGCATTCTTGATGCTCATAGAATCTGCA GACGACACGGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCCAGA GCTGTGGTTGACGAGGTGTTAGCTCCACGGGATTTGGAAGAAGTGTTAAACCAGACTCCC GAGGCAGGCTCAAGTGTGGGAGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA CGTCTTTCTGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG CCAGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTGAAGGAACTGGGAATGCCGTTTTTT CACCACGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAGGAGAAGGAGAACGAGGAA CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG ACTAAAGGGTTTAAAAGAGTTGATGAATCGCTTGAAGATCTGTCTTTGGATGTCCCTGAT GCTGCGAAAAAGTTTTCAAGTTGCGTGGAAAGAGGCAAGCTTGAAGGGTTCTTAGACGAA TCATTCGCTTCTGAGGAATCACAAAGTAAGAAACAGAACGGCTCGTCTTCTTCGTCTGGA TGATAACATTTGAGCACCAAACCT
	3' downstream sequence						caaacctcgagacgttggtttcacgcaaaatcaccttttgaaattctttt..........

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