About Saccharum spontaneum
Saccharum spontaneum is a sugar-poor relative of sugarcane which breeders have backcrossed for traits such as hardiness, disease resistance or ratooning capacity. It belongs to the PACMAD clade within grasses (Poaceae). This is a Hi-C-based genome assembly of one haploid individual (AP85-441, 1n = 4x = 32). The genome size was estimated to be 3.36 Gbp by flow cytometry. This genome is an international collaboration led by Fujian Agriculture and Forestry University, University of Illinois at Urbana-Champaign and Hawaii Agriculture Research Center.
Taxonomy ID 62335
Data source Fujian Agriculture and Forestry University
What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.
Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
Download alignments (EMF)
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor: