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About Saccharum spontaneum

Saccharum spontaneum is a sugar-poor relative of sugarcane which breeders have backcrossed for traits such as hardiness, disease resistance or ratooning capacity. It belongs to the PACMAD clade within grasses (Poaceae). This is a Hi-C-based genome assembly of one haploid individual (AP85-441, 1n =​ 4x =​ 32). The genome size was estimated to be 3.36 Gbp by flow cytometry. This genome is an international collaboration led by Fujian Agriculture and Forestry University, University of Illinois at Urbana-Champaign and Hawaii Agriculture Research Center.

Taxonomy ID 62335

Data source European Nucleotide Archive

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Genome assembly: Sspon.HiC_chr_asm

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Download DNA sequence (FASTA)

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Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species