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About Oryza sativa Japonica

Oryza sativa Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after Zea mays. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. O. sativa has a compact diploid genome of approximately 500 Mb (n=12) compared with the multi-gigabase genomes of maize, wheat and barley.

Taxonomy ID 39947

Data source RAP-DB

More information and statistics

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Example region

Genome assembly: IRGSP-1.0

More information and statistics

Download DNA sequence (FASTA)

Convert your data to IRGSP-1.0 coordinates

Display your data in Ensembl Plants

Example gene

Example transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Example gene tree Pan-taxonomic tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Genomic alignments [70] [Show»«Hide ]

Syntenies [18] [Show»«Hide ]

Example variant

Variation

What can I find? Short sequence variants and longer structural variants.

More about variation in Oryza sativa Japonica Group

More about variation in Ensembl Plants

Download all variants - GVF - VCF - VEP

Variant Effect Predictor

Regulation

What can I find? Microarray annotations.

More about regulation in Oryza sativa Japonica Group

More about the Ensembl Plants microarray annotation strategy

Oryza sativa Japonica Group : Actinidia chinensis	LASTZ_NET \| stats
Oryza sativa Japonica Group : Aegilops tauschii	LASTZ_NET \| stats
Oryza sativa Japonica Group : Amborella trichopoda	LASTZ_NET \| stats
Oryza sativa Japonica Group : Arabidopsis halleri	LASTZ_NET \| stats
Oryza sativa Japonica Group : Arabidopsis lyrata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Arabidopsis thaliana	LASTZ_NET \| stats
Oryza sativa Japonica Group : Beta vulgaris	LASTZ_NET \| stats
Oryza sativa Japonica Group : Brachypodium distachyon	LASTZ_NET \| stats
Oryza sativa Japonica Group : Brassica napus	LASTZ_NET \| stats
Oryza sativa Japonica Group : Brassica oleracea	LASTZ_NET \| stats
Oryza sativa Japonica Group : Brassica rapa	LASTZ_NET \| stats
Oryza sativa Japonica Group : Capsicum annuum	LASTZ_NET \| stats
Oryza sativa Japonica Group : Chlamydomonas reinhardtii	LASTZ_NET \| stats
Oryza sativa Japonica Group : Chondrus crispus	LASTZ_NET \| stats
Oryza sativa Japonica Group : Citrus clementina	LASTZ_NET \| stats
Oryza sativa Japonica Group : Coffea canephora	LASTZ_NET \| stats
Oryza sativa Japonica Group : Corchorus capsularis	LASTZ_NET \| stats
Oryza sativa Japonica Group : Cucumis sativus	LASTZ_NET \| stats
Oryza sativa Japonica Group : Cyanidioschyzon merolae	LASTZ_NET \| stats
Oryza sativa Japonica Group : Cynara cardunculus	LASTZ_NET \| stats
Oryza sativa Japonica Group : Daucus carota	LASTZ_NET \| stats
Oryza sativa Japonica Group : Dioscorea rotundata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Eragrostis tef	LASTZ_NET \| stats
Oryza sativa Japonica Group : Galdieria sulphuraria	LASTZ_NET \| stats
Oryza sativa Japonica Group : Glycine max	LASTZ_NET \| stats
Oryza sativa Japonica Group : Gossypium raimondii	LASTZ_NET \| stats
Oryza sativa Japonica Group : Helianthus annuus	LASTZ_NET \| stats
Oryza sativa Japonica Group : Hordeum vulgare	LASTZ_NET \| stats
Oryza sativa Japonica Group : Ipomoea triloba	LASTZ_NET \| stats
Oryza sativa Japonica Group : Leersia perrieri	LASTZ_NET \| stats
Oryza sativa Japonica Group : Lupinus angustifolius	LASTZ_NET \| stats
Oryza sativa Japonica Group : Manihot esculenta	LASTZ_NET \| stats
Oryza sativa Japonica Group : Marchantia polymorpha	LASTZ_NET \| stats
Oryza sativa Japonica Group : Medicago truncatula	LASTZ_NET \| stats
Oryza sativa Japonica Group : Musa acuminata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Nicotiana attenuata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza barthii	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza brachyantha	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza glaberrima	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza glumipatula	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza longistaminata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza meridionalis	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza nivara	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza punctata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza rufipogon	LASTZ_NET \| stats
Oryza sativa Japonica Group : Oryza sativa Indica Group	LASTZ_NET \| stats
Oryza sativa Japonica Group : Ostreococcus lucimarinus	LASTZ_NET \| stats
Oryza sativa Japonica Group : Panicum hallii FIL2	LASTZ_NET \| stats
Oryza sativa Japonica Group : Panicum hallii HAL2	LASTZ_NET \| stats
Oryza sativa Japonica Group : Phaseolus vulgaris	LASTZ_NET \| stats
Oryza sativa Japonica Group : Physcomitrella patens	LASTZ_NET \| stats
Oryza sativa Japonica Group : Populus trichocarpa	LASTZ_NET \| stats
Oryza sativa Japonica Group : Prunus avium	LASTZ_NET \| stats
Oryza sativa Japonica Group : Prunus persica	LASTZ_NET \| stats
Oryza sativa Japonica Group : Saccharum spontaneum	LASTZ_NET \| stats
Oryza sativa Japonica Group : Selaginella moellendorffii	LASTZ_NET \| stats
Oryza sativa Japonica Group : Setaria italica	LASTZ_NET \| stats
Oryza sativa Japonica Group : Solanum lycopersicum	LASTZ_NET \| stats
Oryza sativa Japonica Group : Solanum tuberosum	LASTZ_NET \| stats
Oryza sativa Japonica Group : Sorghum bicolor	LASTZ_NET \| stats
Oryza sativa Japonica Group : Theobroma cacao	LASTZ_NET \| stats
Oryza sativa Japonica Group : Trifolium pratense	LASTZ_NET \| stats
Oryza sativa Japonica Group : Triticum aestivum	LASTZ_NET \| stats
Oryza sativa Japonica Group : Triticum dicoccoides	LASTZ_NET \| stats
Oryza sativa Japonica Group : Triticum turgidum	LASTZ_NET \| stats
Oryza sativa Japonica Group : Triticum urartu	LASTZ_NET \| stats
Oryza sativa Japonica Group : Vigna angularis	LASTZ_NET \| stats
Oryza sativa Japonica Group : Vigna radiata	LASTZ_NET \| stats
Oryza sativa Japonica Group : Vitis vinifera	LASTZ_NET \| stats
Oryza sativa Japonica Group : Zea mays	LASTZ_NET \| stats

Oryza sativa Japonica Group : Arabidopsis thaliana	\| stats
Oryza sativa Japonica Group : Brachypodium distachyon	\| stats
Oryza sativa Japonica Group : Leersia perrieri	\| stats
Oryza sativa Japonica Group : Musa acuminata	\| stats
Oryza sativa Japonica Group : Oryza barthii	\| stats
Oryza sativa Japonica Group : Oryza brachyantha	\| stats
Oryza sativa Japonica Group : Oryza glaberrima	\| stats
Oryza sativa Japonica Group : Oryza glumipatula	\| stats
Oryza sativa Japonica Group : Oryza nivara	\| stats
Oryza sativa Japonica Group : Oryza punctata	\| stats
Oryza sativa Japonica Group : Oryza rufipogon	\| stats
Oryza sativa Japonica Group : Oryza sativa Indica Group	\| stats
Oryza sativa Japonica Group : Panicum hallii FIL2	\| stats
Oryza sativa Japonica Group : Panicum hallii HAL2	\| stats
Oryza sativa Japonica Group : Setaria italica	\| stats
Oryza sativa Japonica Group : Sorghum bicolor	\| stats
Oryza sativa Japonica Group : Vitis vinifera	\| stats
Oryza sativa Japonica Group : Zea mays	\| stats

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About Oryza sativa Japonica

Genome assembly: IRGSP-1.0

Gene annotation

Comparative genomics

Variation

Regulation

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About Oryza sativa Japonica

Genome assembly: IRGSP-1.0

Gene annotation

Comparative genomics

Variation

Regulation

Links

About this species

About Us

Get help

Our sister sites

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