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Oryza sativa Japonica Group (IRGSP-1.0) ▼

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About Oryza sativa Japonica

Oryza sativa Japonica (rice) is the staple food for 2.5 billion people. It is the grain with the second highest worldwide production after Zea mays. In addition to its agronomic importance, rice is an important model species for monocot plants and cereals such as maize, wheat, barley and sorghum. O. sativa has a compact diploid genome of approximately 500 Mb (n=12) compared with the multi-gigabase genomes of maize, wheat and barley.

Taxonomy ID 39947

Data source IRGSP

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Genome assembly: IRGSP-1.0

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Other cultivars

This species has data on 15 additional cultivars. View list of cultivars

Example geneExample transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Example gene tree Pan-taxonomic tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

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Example variant

Variation

What can I find? Short sequence variants and longer structural variants.

More about variation in Ensembl Plants

Download all variants - GVF - VCF - VEP

Variant Effect Predictor