Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
----
-
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)
------------------------------------------------------------
----
Galdieria sulphuraria (Galdieria sulphuraria strain 074W)
-----------
Chondrus crispus (Chondrus crispus strain Stackhouse)
-----------------------------------
-
Eragrostis tef (Eragrostis tef strain Tsedey)
----------
Eragrostis curvula (Eragrostis curvula strain Tanganyika)
----------
Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A))
----------
-
Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))
----------
----
Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A))
-----------------
Triticum urartu (Triticum urartu strain G1812 (PI428198))
--------------
-
Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U))
----------
----
Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U))
-----------------
-
Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78)
----------------
Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D))
----------
-------
Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B))
--------------------
-
Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B))
------------------
-------
Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))
----------------------------
Hordeum vulgare (Hordeum vulgare subsp. vulgare reference (Morex) cultivar)
-----------------------------
Brachypodium distachyon (Brachypodium distachyon strain Bd21)
-------------
-
Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)
-------------
----
Oryza nivara (Oryza nivara strain IRGC:100897)
-------------
----
-
Oryza sativa Japonica Group (Oryza sativa Japonica Group strain Nipponbare)
-------
-
----------
Oryza rufipogon (Oryza rufipogon strain W1943)
-----------------------
-
Oryza barthii (Oryza barthii strain IRGC:105608)
----------------
----
Oryza glaberrima (Oryza glaberrima strain CG14)
-------------------------------
Oryza glumipatula (Oryza glumipatula)
----------------
----------------
Oryza longistaminata (Oryza longistaminata)
----------------
-------------------
Oryza meridionalis (Oryza meridionalis strain OR44 (W2112))
-------------
-----------------------
Oryza punctata (Oryza punctata strain IRGC:105690)
------------------------------------
Oryza brachyantha (Oryza brachyantha strain IRGC:101232)
-------------------------------------
Leersia perrieri (Leersia perrieri strain IRGC:105164)
-------------
-
Zea mays (Zea mays strain B73)
-------
-------
----
Sorghum bicolor (Sorghum bicolor strain BTx623)
----------------------
Saccharum spontaneum (component A) (Saccharum spontaneum strain AP85-441 (component A))
-------------------
-
Saccharum spontaneum (component C) (Saccharum spontaneum strain AP85-441 (component C))
-------------------
Saccharum spontaneum (component B) (Saccharum spontaneum strain AP85-441 (component B))
---------------------------------
----
Saccharum spontaneum (component D) (Saccharum spontaneum strain AP85-441 (component D))
------------------------
Panicum hallii FIL2 (Panicum hallii ecotype FIL2)
-------
------------------
Setaria viridis (Setaria viridis strain A10)
---------------------------
Setaria italica (Setaria italica strain Yugu1)
---------------------------
Panicum hallii HAL2 (Panicum hallii var. hallii reference (HAL2) ecotype)
------------------------------------------------
Musa acuminata (Musa acuminata subsp. malaccensis cultivar Doubled-haploid Pahang (DH-Pahang))
-------------------------------------------------
Ananas comosus (Ananas comosus strain F153)
-------------------------------------------------
Dioscorea rotundata (Dioscorea cayenensis subsp. rotundata)
--------------------------------------------------
Asparagus officinalis (Asparagus officinalis strain DH00/086)
--------------------------
-
Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)
-------------
Chenopodium quinoa (Chenopodium quinoa strain PI614886)
---------------------
-
Manihot esculenta (Manihot esculenta strain AM560-2)
----------------
Populus trichocarpa (Populus trichocarpa strain Nisqually 1)
----------------
-
Prunus dulcis (Prunus dulcis strain Texas)
----------------
----
Prunus persica (Prunus persica strain Lovell)
-
----------
--------
Malus domestica Golden (Malus domestica strain Golden Delicious)
------------------------
Cannabis sativa female (Cannabis sativa)
------------------------
Rosa chinensis (Rosa chinensis)
--------------------
-
Trifolium pratense (Trifolium pratense strain Milvus B)
-------------
-------
Medicago truncatula (Medicago truncatula strain A17)
----------------------
-
Vigna radiata (Vigna radiata var. radiata strain VC1973A)
----------------
-
----
Vigna angularis (Vigna angularis strain Jingnong 6)
--------------------------
Glycine max (Glycine max strain Williams 82)
--------------------------
Phaseolus vulgaris (Phaseolus vulgaris strain G19833)
---------------------------
Lupinus angustifolius (Lupinus angustifolius strain Tanjil)
-------------------
Cucumis melo (Cucumis melo)
------------------------
-
Citrullus lanatus (Citrullus lanatus strain 97103)
-------------------
Cucumis sativus (Cucumis sativus strain 9930)
----------------------------
Juglans regia (Juglans regia cultivar Chandler)
----------------
-
Theobroma cacao Matina 1-6 (Theobroma cacao reference (Matina) cultivar)
---------------------------
-------
----
Theobroma cacao Belizian Criollo B97-61/B2 (Theobroma cacao cultivar Criollo B97-61/B2)
-------
-----------------
Corchorus capsularis (Corchorus capsularis strain CVL-1)
-------------
-----------
Gossypium raimondii (Gossypium raimondii)
----------------------
Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302)
----------------------
-
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)
-------------------------
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)
-------------------------
Camelina sativa (component G1) (Camelina sativa strain dh55 (component G1))
--------------------
-
-
-
Camelina sativa (component G2) (Camelina sativa strain dh55 (component G2))
-------------------------
Camelina sativa (component G3) (Camelina sativa strain dh55 (component G3))
-------------------------
Brassica rapa (Brassica rapa strain Chiifu-401-42)
----------------------
-
Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)
----------------------
Brassica napus (Brassica napus strain Darmor-bzh)
---------------------------
Eucalyptus grandis (Eucalyptus grandis strain BRASUZ1)
---------------------------
Pistacia vera (Pistacia vera strain Batoury)
---------------------------
Citrus clementina (Citrus clementina strain Clemenules)
--------------------------------
Vitis vinifera (Vitis vinifera strain PN40024)
-------
--------------
-
Helianthus annuus (Helianthus annuus strain XRQ/B)
----------------------
Daucus carota (Daucus carota subsp. sativus strain DH1)
----------------------
-
Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)
-------------------
----
Solanum tuberosum (Solanum tuberosum cultivar DM 1-3 516 R44)
--------------------------
Nicotiana attenuata (Nicotiana attenuata strain UT)
------------------------
--------
Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334)
------------------------
Sesamum indicum (Sesamum indicum strain Zhongzhi No. 13)
------------------------
Olea europaea var. sylvestris (Olea europaea var. sylvestris)
-------
------------------
Cynara cardunculus (Cynara cardunculus var. scolymus)
---------------------------
Coffea canephora (Coffea canephora strain DH200-94)
---------------------------
Ipomoea triloba (Ipomoea triloba strain NCNSP0323)
---------------------------
Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5)
------------------------------------------------------------
Nymphaea colorata (Nymphaea colorata strain Beijing-Zhang1983)
-------
------------------------------------------------------
Amborella trichopoda (Amborella trichopoda)
---------------------------------------------------------------
Papaver somniferum (Papaver somniferum strain High Noscapine 1 (HN1))
----------------------------------------------------------------
Selaginella moellendorffii (Selaginella moellendorffii)
-----------------------------------------------------------------
Marchantia polymorpha (Marchantia polymorpha strain Tak-1)
-----------------------------------------------------------------
Physcomitrium patens (Physcomitrium patens strain Gransden 2004)
----
------------------------------------------------------------
Chara braunii (Chara braunii strain S276)
-------
-
Caenorhabditis elegans (Caenorhabditis elegans strain N2)
-------
----
Drosophila melanogaster (Drosophila melanogaster)
----------------------------------------------------
----
-
C.savignyi (Ciona savignyi)
----------
Human (Homo sapiens)
---------------
Saccharomyces cerevisiae (Saccharomyces cerevisiae strain S288C)
----------------------------------------------------------------
Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)