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Theobroma cacao (Criollo_cocoa_genome_V2) ▼

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View karyotypeExample region

Genome assembly: Criollo_cocoa_genome_V2

More information and statistics

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Example geneExample transcript

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

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Example gene tree

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Genomic alignments [11] [Show»«Hide
Theobroma cacao : Arabidopsis halleriLASTZ_NET | stats
Theobroma cacao : Arabidopsis lyrataLASTZ_NET | stats
Theobroma cacao : Arabidopsis thalianaLASTZ_NET | stats
Theobroma cacao : Brassica napusLASTZ_NET | stats
Theobroma cacao : Brassica oleraceaLASTZ_NET | stats
Theobroma cacao : Brassica rapaLASTZ_NET | stats
Theobroma cacao : Citrus clementinaLASTZ_NET | stats
Theobroma cacao : Corchorus capsularisLASTZ_NET | stats
Theobroma cacao : Gossypium raimondiiLASTZ_NET | stats
Theobroma cacao : Oryza sativa Japonica GroupLASTZ_NET | stats
Theobroma cacao : Vitis viniferaLASTZ_NET | stats
]

Syntenies [1] [Show»«Hide
Theobroma cacao : Vitis vinifera | stats
]

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species