About Theobroma cacao
Theobroma cacao (cacao or chocolate tree) is a neotropical plant native to Amazonian rainforests. It is now cultivated in over 50 countries. A member of Malvaceae family, its beans are harvested from pods for use as the food chocolate, in confections and cosmetics. This is the genome assembly and annotation of the Matina 1-6 cultivar, which belongs to the most cultivated cacao type worldwide.
Taxonomy ID 3641
Data source The Cacao Genome Database
Display your data in Ensembl Plants
Update your old Ensembl IDs
Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
Download alignments (EMF)
Genomic alignments [3]
[Show»«Hide
| Theobroma cacao : Arabidopsis thaliana | LASTZ_NET | stats |
| Theobroma cacao : Oryza sativa Japonica | LASTZ_NET | stats |
| Theobroma cacao : Vitis vinifera | LASTZ_NET | stats |
Variation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Links
- http://www.cacaogenomedb.org/
- http://www.phytozome.net/cacao.php
- http://www.ars.usda.gov/is/pr/2010/100915.htm
- http://cocoagendb.cirad.fr/ : Another cacao genome project, Criollo cultivar
![[RSS logo]](/i/rss_icon_16.png "Ensembl blog"){kind=icon}
![[twitter logo]](/i/twitter.png "Follow us on Twitter!")
