About Theobroma cacao
Theobroma cacao (cacao or chocolate tree) is a neotropical plant native to Amazonian rainforests. It is now cultivated in over 50 countries. A member of Malvaceae family, its beans are harvested from pods for use as the food chocolate, in confections and cosmetics. This is the genome assembly and annotation of the Matina 1-6 cultivar, which belongs to the most cultivated cacao type worldwide.
Taxonomy ID 3641
Data source Cacao Genome Consortium
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Comparative genomics
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
More about comparative analyses
Phylogenetic overview of gene families
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Genomic alignments [11]
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Syntenies [3]
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Variation
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:
Links
- http://www.cacaogenomedb.org/
- http://www.phytozome.net/cacao.php
- http://www.ars.usda.gov/is/pr/2010/100915.htm
- http://cocoagendb.cirad.fr/ : Another cacao genome project, Criollo cultivar
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