About Theobroma cacao
Theobroma cacao (cacao or chocolate tree) is a neotropical plant native to Amazonian rainforests. It is now cultivated in over 50 countries. A member of Malvaceae family, its beans are harvested from pods for use as the food chocolate, in confections and cosmetics. Cacao is a diploid species (2n=2x=20) with a relatively small genome (from 411 Mb to 494 Mb). This is the genome assembly and annotation of the Matina 1-6 cultivar, which belongs to the most cultivated cacao type worldwide.
Taxonomy ID 3641
Data source Cacao Genome Consortium
What can I find? Homologues, gene trees, and whole genome alignments across multiple species.
Download alignments (EMF)
|Theobroma cacao Matina 1-6 : Arabidopsis thaliana||LASTZ_NET | stats|
|Theobroma cacao Matina 1-6 : Oryza sativa Japonica Group||LASTZ_NET | stats|
|Theobroma cacao Matina 1-6 : Vitis vinifera||LASTZ_NET | stats|
This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor: