Brassica rapa R-o-18 (SCU_BraROA_2.3)

About Brassica rapa

Brassica rapa is widely cultivated as leafy and root vegetables as well as an oilseed and condiment, with different subspecies having distinct morphotypes producing turnips (roots), bok and pak choi, choi sum, Chinese cabbage, broccoletto, turnip, oilseed rape, as well as field and yellow mustard. This genome corresponds to the diploid (AA, 2n=20) genotype R-o-18, an inbred line of the mustard crop yellow sarson (B. rapa subsp. trilocularis), which has been used to produce a TILLING population for reverse genetics studies [1].

Taxonomy ID 1813537

Data source Brassica rapa R-o-18 genome sequencing consortium

More information and statistics

Genome assembly: SCU_BraROA_2.3

More information and statistics

Download DNA sequence (FASTA)

Display your data in Ensembl Plants

Other cultivars

This species has data on 1 additional cultivars. View list of cultivars

Gene annotation

What can I find? Protein-coding and non-coding genes, splice variants, cDNA and protein sequences, non-coding RNAs.

More about this genebuild

Download genes, cDNAs, ncRNA, proteins - FASTA - GFF3

Update your old Ensembl IDs

Comparative genomics

What can I find? Homologues, gene trees, and whole genome alignments across multiple species.

More about comparative analyses

Phylogenetic overview of gene families

Download alignments (EMF)

Genomic alignments [1] [Show»«Hide
Brassica rapa R-o-18 : Arabidopsis thalianaLASTZ_NET | stats
]

Variation

This species currently has no variation database. However you can process your own variants using the Variant Effect Predictor:

Variant Effect Predictor

About this species