We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

Ensembl Genomes HomeEnsembl Plants HomeEnsembl Plants Home ▼
More ▼
    Search »
    Corylus avellana (CavTom2PMs-1.0) ▼

    Favourite species

    All species

    Recent locations

    Transcript-based displays

    Configure this page

    Custom tracks

    Export data

    Bookmark this page

    Transcript: Cav01g02080.t1

    Location

    Primary_assembly ca1: 2,474,827-2,481,870 forward strand.

    About this transcript

    This transcript has 11 exons and is annotated with 9 domains and features.

    Gene

    This transcript is a product of gene Cav01g02080 Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeFlags
    -Cav01g02080.t11709407aa
     
    Protein coding
    		Ensembl Canonical

    Exons

    Download sequence
    Exons/ Introns
    • Translated sequence
    • Flanking sequence
    • Intron sequence
    • UTR
    Markup
    • loading
    ▼▲
    Show/hide columns
    • No.
    • Exon / Intron
    • Start
    • End
    • Start Phase
    • End Phase
    • Length
    • Sequence
    Download what you seeDownload whole table
    No.Exon / IntronStartEndStart PhaseEnd PhaseLengthSequence
    5' upstream sequence 
    ..........cccggaaatagcttctccctcttctccctcatctcttttctccgagacta
    1Cav01g02080.t1-E12,474,8272,475,034-1208 
    GGAAAATCAGAAAGAGAATACACAGCGAAGCCAATCCACACCGACCTCTCTTTGTTCTAT
CTTTCTGTATCTCACACGCGCAGAACGATGCCGTTTTGCAATATTAGGACGCAACAAGCC
AGCTCAGACACGAAGCTCTGCGACAATGGAGTCAAAATCTTTTACAGAACGTACGGTCAC
GGACCTACCAAGGTCCTCCTCATCATAG
     Intron 1-22,475,0352,475,272238 
    gtcacccatcaaattcaaattcttt..........gatggtttcggtgatggacgatcag
    2Cav01g02080.t1-E22,475,2732,475,46812196 
    GATTGGCAGGGACCCACGAGTCATGGGGCCCACAGATCAAGGAGCTAGTGGGGACCGATA
CGCCCAATGAAGATGAAACGAGGACCGGAGATTGGAGTTCCGATGACAACGAGAGTGGCG
GTGGTATTGAAATATGTGCGTTTGATAACCGTGGAATGGGTCGAAGCACCGTACCCACCA
AAAAATCCGAATACAC
     Intron 2-32,475,4692,476,228760 
    gtgagtttttgtttcagtttcatgt..........aatggcatatgattgttgggtgcag
    3Cav01g02080.t1-E32,476,2292,476,3112183 
    AACAGAGATTATGGCAAAGGATGCAATTGCTTTGTTGGATCATTTGGGCTGGAAAAAAGC
TCATGTTTTTGGACATTCAATGG
     Intron 3-42,476,3122,476,586275 
    gtgagtctctcccctgagttttcat..........ttcttattttgtactgtcaaaacag
    4Cav01g02080.t1-E42,476,5872,476,68710101 
    GAGCTATGATAGCTTGCAAGTTAGCAGCAATGGTACCTGAAAGAGCTCTCTCATTGGCTT
TACTTAACGTAACAGGTGGAGGTTTCGAGTGTTTTCCAAAG
     Intron 4-52,476,6882,479,1422,455 
    gtattctatatcttttggcaccact..........tcaaattattatttttttcttgcag
    5Cav01g02080.t1-E52,479,1432,479,2380096 
    CTCGATCGACAAACATTATCCGTTGCAATCCGTTTCTTACGGGCCAAAACTCCTGAGCAA
CGGGCAGCTGTTGACCTGGACACCCACTACTCAAGG
     Intron 5-62,479,2392,479,552314 
    gtaaaggatactttcaattctctct..........atttcactttgtatatgatacgcag
    6Cav01g02080.t1-E62,479,5532,479,6060054 
    GAGTATCTTGAAGAATATGTTGGACCTAACACCAGAAGAACAATCTTATATCAA
     Intron 6-72,479,6072,480,311705 
    gtaagaaatgttaaagctatcaatc..........ttgacatttgacctgtgtgctgcag
    7Cav01g02080.t1-E72,480,3122,480,46002149 
    GAATATGTAAAAGGTATATCAGCAACTGGAATGCAGTCTAACAATGGTTTTGAGGGTCAA
GTTAATGCTTGCTGGACACATAAAATGACTCGAGCAGAAATCGAAATGATCCGTTCCGCT
GGAATTCTTGTTTCAGTCATTCATGGCAG
     Intron 7-82,480,4612,480,651191 
    gtgcgcagccagattttctgtaaaa..........taatgtctactctctgaatgtatag
    8Cav01g02080.t1-E82,480,6522,480,76920118 
    GCATGATATAATTGCTCAAATATATTACGCAAGGAAACTTGCGGAGAAGCTGCAGCCTGT
TGCTCGGATGGTAGAACTTCATGGAGGTCATCTAGTGAGCCATGAGAGGACCGAAGAG
     Intron 8-92,480,7702,480,982213 
    gtatttttcatctgtagttgattat..........ttcccccccccccctaaaattacag
    9Cav01g02080.t1-E92,480,9832,481,0730191 
    GTCAATCAAGCACTGCTTGAGTTGATAGAGGCATCAGAAGTGAAGAAGATGAAGCCTAGT
GTTTGGACTAATATGCCAAAGAAAAGCTCTG
     Intron 9-102,481,0742,481,15481 
    gtaagtatcacatatccaccactga..........tgatatgtgctgttctttccggcag
    10Cav01g02080.t1-E102,481,1552,481,3891-235 
    GGTGGATAGGGACAAGGATGGCATTAATGAGAATAAACACAGAGGGTGGAAGCAATGCCT
CTCTCGTGTTTTATTACTTGCTATCAAAACTGCAGCTTTGCGTGTTGTACTTCTTTGGTC
TCTTTGTTTTGGCATTCGAGTATGGTCGGAGGGTTATAACAAGTTGTAAACCGGCTAGAG
TTGGAACTTCCCTTACATTAGAGAACAGTCAATGAACCATTGTTTCTTCTTACTG
     Intron 10-112,481,3902,481,492103 
    gtaatcctcttctccaactttttct..........ttttttttttcctgttcttgtgcag
    11Cav01g02080.t1-E112,481,4932,481,870--378 
    GGTCAATTGATTTGTCACCCAAACCCTATACGAAGTCAACCAAGTGATGAATAATACACT
GGATTCTTCAACAACATTTTTCAATAAGATGAGAGGCTTATGCATTCGGCAACGCATCTT
CAAAGCTGTTTGGAGGCACAAATGTTGGGAGATTGGAACAACCAATATTTTGAGGCAGAT
CCTTCTCCCCGTGCCATTGGTTTCATTTTTACTTACAAAAGATGATGATAACAAATCCCC
TCTGTATCTACAACAAACTCTCTACTCCCTACTACACCTTTCCGGGTGCAATTCAAAAGA
GAAAACATTTAATGGGTCTTTTTCTTTTCTTTTTTTCGAATCCTTCTGCTAATTACAGAA
TAAATCAGTCTCGTAATC
    3' downstream sequence 
    tctacaactacaagtaacatgctttacctggttacttggttgatggaact..........

    This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Policy and Terms of Use

    I Agree