Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Statistics about the gene tree nodes
Species | # Nodes | # speciation nodes | # duplication nodes | # dubious nodes | Node types | Average duplication confidence score | Average duplication confidence score (non-dubious nodes) |
---|---|---|---|---|---|---|---|
Eukaryotes (Eukaryota) | 6849 | 4905 | 1403 | 541 | 20.9 % | 29.0 % | |
Eukaryotes (Eukaryota) | 7211 | 5577 | 1009 | 625 | 9.7 % | 15.8 % | |
Animals and Fungi (Opisthokonta) | 1833 | 1742 | 43 | 48 | 21.9 % | 46.4 % | |
Bilateral animals (Bilateria) | 5421 | 4880 | 362 | 179 | 33.5 % | 50.1 % | |
Bilateral animals (Bilateria) | 5267 | 4996 | 214 | 57 | 45.3 % | 57.4 % | |
Chordates (Chordata) | 4440 | 4272 | 168 | 0 | 67.9 % | 67.9 % | |
Green plants (Viridiplantae) | 7278 | 5904 | 1012 | 362 | 14.3 % | 19.4 % | |
Charophyte/embryophyte group (Streptophytina) | 8298 | 6244 | 1536 | 518 | 16.4 % | 21.9 % | |
Land plants (Embryophyta) | 13638 | 3754 | 6181 | 3703 | 21.8 % | 34.8 % | |
Land plants (Embryophyta) | 17192 | 10384 | 5441 | 1367 | 17.3 % | 21.7 % | |
Flowering plants (Magnoliopsida) | 35387 | 18742 | 11361 | 5284 | 14.0 % | 20.5 % | |
Mesangiospermae | 51491 | 31883 | 12079 | 7529 | 10.7 % | 17.4 % | |
Mesangiospermae | 21507 | 13829 | 3705 | 3973 | 10.6 % | 21.9 % | |
Pentapetalae | 80636 | 48334 | 12641 | 19661 | 6.8 % | 17.4 % | |
Pentapetalae | 15183 | 12202 | 638 | 2343 | 3.7 % | 17.1 % | |
rosids | 24536 | 17707 | 1956 | 4873 | 6.6 % | 22.9 % | |
rosids | 18303 | 15242 | 930 | 2131 | 5.6 % | 18.4 % | |
rosids | 21147 | 16227 | 1250 | 3670 | 4.6 % | 18.0 % | |
Eucalypteae | 26452 | 20894 | 5558 | 0 | 83.9 % | 83.9 % | |
rosids | 36720 | 30135 | 1974 | 4611 | 6.0 % | 20.0 % | |
fabids | 17028 | 14026 | 568 | 2434 | 3.6 % | 19.1 % | |
Benincaseae | 19932 | 17593 | 2322 | 17 | 78.8 % | 79.3 % | |
Cucumis | 17541 | 17020 | 521 | 0 | 76.4 % | 76.4 % | |
fabids | 22835 | 20130 | 1472 | 1233 | 17.3 % | 31.7 % | |
50 kb inversion clade | 25330 | 18853 | 5912 | 565 | 54.5 % | 59.7 % | |
NPAAA clade | 25428 | 23248 | 1988 | 192 | 44.5 % | 48.8 % | |
Phaseoleae | 25648 | 22889 | 2342 | 417 | 44.2 % | 52.1 % | |
Phaseoleae | 23863 | 23053 | 776 | 34 | 44.7 % | 46.7 % | |
Phaseoleae | 23472 | 22557 | 849 | 66 | 58.0 % | 62.6 % | |
Vigna | 22996 | 22248 | 711 | 37 | 61.1 % | 64.3 % | |
Vigna | 17202 | 16833 | 369 | 0 | 68.7 % | 68.7 % | |
Glycine subgen. Soja | 60731 | 40739 | 19992 | 0 | 91.4 % | 91.4 % | |
IRL clade | 23675 | 20818 | 2542 | 315 | 54.4 % | 61.1 % | |
Trifolieae | 22069 | 20416 | 1653 | 0 | 69.9 % | 69.9 % | |
fabids | 19275 | 18291 | 607 | 377 | 20.9 % | 33.9 % | |
Fagales | 18390 | 17551 | 742 | 97 | 47.2 % | 53.3 % | |
Fagales | 12713 | 12434 | 279 | 0 | 61.5 % | 61.5 % | |
Quercus | 31901 | 23865 | 8036 | 0 | 80.7 % | 80.7 % | |
Rosales | 14237 | 13947 | 249 | 41 | 34.7 % | 40.4 % | |
Rose family (Rosaceae) | 20501 | 18744 | 1713 | 44 | 52.5 % | 53.9 % | |
Amygdaloideae | 18687 | 17752 | 916 | 19 | 56.2 % | 57.3 % | |
Prunus | 23532 | 19888 | 3555 | 89 | 66.2 % | 67.9 % | |
Prunus | 20955 | 19911 | 1044 | 0 | 70.0 % | 70.0 % | |
Rosales | 11217 | 10836 | 381 | 0 | 69.4 % | 69.4 % | |
rosids | 18030 | 17193 | 301 | 536 | 11.5 % | 32.0 % | |
malvids | 14034 | 13901 | 107 | 26 | 32.4 % | 40.3 % | |
Sapindales | 15355 | 15028 | 327 | 0 | 72.3 % | 72.3 % | |
Mallow family (Malvaceae) | 21213 | 18177 | 2832 | 204 | 43.5 % | 46.6 % | |
Mallow family (Malvaceae) | 14181 | 14006 | 175 | 0 | 63.4 % | 63.4 % | |
Malpighiales | 14937 | 14658 | 279 | 0 | 69.9 % | 69.9 % | |
Mustard family (Brassicaceae) | 41952 | 27766 | 11748 | 2438 | 45.0 % | 54.3 % | |
Camelineae | 26829 | 24610 | 2057 | 162 | 45.5 % | 49.1 % | |
Arabidopsis | 24739 | 23534 | 1107 | 98 | 56.3 % | 61.3 % | |
Arabidopsis | 23878 | 22627 | 1251 | 0 | 70.7 % | 70.7 % | |
False flax (Camelina sativa) | 27851 | 23490 | 2475 | 1886 | 32.3 % | 56.9 % | |
False flax (Camelina sativa) | 19969 | 19409 | 560 | 0 | 62.3 % | 62.3 % | |
Mustard family (Brassicaceae) | 14879 | 14131 | 536 | 212 | 34.8 % | 48.5 % | |
Mustard family (Brassicaceae) | 20957 | 19778 | 1156 | 23 | 54.4 % | 55.5 % | |
Brassica | 108990 | 52241 | 52649 | 4100 | 43.8 % | 47.2 % | |
Brassica | 21277 | 20143 | 1134 | 0 | 63.1 % | 63.1 % | |
Brassica | 52920 | 42204 | 10716 | 0 | 60.3 % | 60.3 % | |
Pentapetalae | 10596 | 9834 | 257 | 505 | 9.2 % | 27.2 % | |
Asteridae (asterids) | 16880 | 15216 | 708 | 956 | 9.3 % | 21.9 % | |
Asteridae (asterids) | 21327 | 19721 | 794 | 812 | 13.1 % | 26.5 % | |
lamiids | 17692 | 15616 | 742 | 1334 | 10.5 % | 29.3 % | |
lamiids | 17063 | 16458 | 457 | 148 | 25.6 % | 33.9 % | |
Lamiales | 15010 | 13887 | 1120 | 3 | 67.5 % | 67.6 % | |
Oleeae | 41670 | 27933 | 13737 | 0 | 86.0 % | 86.0 % | |
Solanales | 14681 | 14180 | 488 | 13 | 51.5 % | 52.9 % | |
Nightshade family (Solanaceae) | 18507 | 13941 | 4489 | 77 | 63.1 % | 64.2 % | |
Solanoideae | 21950 | 19482 | 2413 | 55 | 65.1 % | 66.5 % | |
Solanum | 21149 | 19146 | 2003 | 0 | 73.1 % | 73.1 % | |
campanulids | 10495 | 10298 | 192 | 5 | 44.7 % | 45.9 % | |
Daisy family (Asteraceae) | 29408 | 21485 | 7307 | 616 | 65.8 % | 71.3 % | |
Daisy family (Asteraceae) | 17155 | 16696 | 459 | 0 | 69.3 % | 69.3 % | |
Chenopodiaceae | 16052 | 14175 | 1877 | 0 | 76.4 % | 76.4 % | |
Petrosaviidae | 20871 | 16465 | 2724 | 1682 | 18.5 % | 29.9 % | |
Petrosaviidae | 7359 | 7194 | 165 | 0 | 58.8 % | 58.8 % | |
commelinids | 14532 | 13242 | 1046 | 244 | 26.2 % | 32.4 % | |
Poales | 11302 | 10375 | 837 | 90 | 31.9 % | 35.3 % | |
Grass family (Poaceae) | 59734 | 39053 | 15635 | 5046 | 24.3 % | 32.2 % | |
BEP clade (BOP clade) | 25882 | 24408 | 996 | 478 | 18.6 % | 27.5 % | |
Pooideae | 25821 | 22453 | 2921 | 447 | 32.9 % | 37.9 % | |
Pooideae | 32601 | 27864 | 4089 | 648 | 31.1 % | 36.0 % | |
Triticeae | 33051 | 25625 | 5728 | 1698 | 34.4 % | 44.7 % | |
Triticeae | 34408 | 27599 | 3934 | 2875 | 21.3 % | 36.8 % | |
Triticinae | 44575 | 35529 | 4727 | 4319 | 20.2 % | 38.7 % | |
Triticum | 25292 | 23241 | 1116 | 935 | 32.0 % | 58.8 % | |
Triticum | 25020 | 24026 | 994 | 0 | 73.0 % | 73.0 % | |
Triticinae | 28863 | 26916 | 1505 | 442 | 35.2 % | 45.5 % | |
Triticum | 25555 | 23421 | 1315 | 819 | 30.6 % | 49.7 % | |
Triticum | 24496 | 22963 | 565 | 968 | 21.8 % | 59.2 % | |
Triticum | 24624 | 23760 | 864 | 0 | 75.6 % | 75.6 % | |
Triticinae | 25610 | 24833 | 777 | 0 | 69.2 % | 69.2 % | |
Poeae | 24136 | 21663 | 2455 | 18 | 62.7 % | 63.2 % | |
Oats (Avena sativa) | 78539 | 44920 | 33619 | 0 | 86.2 % | 86.2 % | |
Oryzinae | 26014 | 22302 | 2277 | 1435 | 27.3 % | 44.4 % | |
Oryzinae | 22056 | 20893 | 947 | 216 | 31.9 % | 39.2 % | |
Oryza | 27861 | 24984 | 2157 | 720 | 31.2 % | 41.6 % | |
Oryza | 31202 | 24988 | 2667 | 3547 | 15.9 % | 36.9 % | |
Oryza | 27035 | 22425 | 1843 | 2767 | 13.3 % | 33.2 % | |
Oryza | 36053 | 30574 | 1703 | 3776 | 11.7 % | 37.8 % | |
Oryza | 42005 | 36664 | 1409 | 3932 | 9.9 % | 37.6 % | |
Oryza | 17739 | 17655 | 84 | 0 | 59.5 % | 59.5 % | |
Oryza | 32120 | 28749 | 531 | 2840 | 6.9 % | 44.1 % | |
Oryza | 24256 | 23374 | 364 | 518 | 20.2 % | 48.9 % | |
Oryza | 16980 | 16927 | 53 | 0 | 60.4 % | 60.4 % | |
PACMAD clade | 35435 | 29794 | 4875 | 766 | 30.6 % | 35.4 % | |
Eragrostis | 29954 | 23766 | 6188 | 0 | 69.4 % | 69.4 % | |
Panicoideae | 31589 | 27938 | 2675 | 976 | 23.9 % | 32.6 % | |
Andropogoneae | 22418 | 20309 | 1951 | 158 | 33.3 % | 35.9 % | |
Andropogoneae | 19267 | 18320 | 828 | 119 | 37.8 % | 43.2 % | |
Fodder cane (Saccharum spontaneum) | 8457 | 7503 | 538 | 416 | 26.1 % | 46.4 % | |
Fodder cane (Saccharum spontaneum) | 6683 | 6216 | 307 | 160 | 34.2 % | 52.0 % | |
Fodder cane (Saccharum spontaneum) | 3557 | 3462 | 95 | 0 | 63.2 % | 63.2 % | |
Paniceae | 25770 | 22430 | 1707 | 1633 | 21.1 % | 41.3 % | |
Paniceae | 25706 | 23947 | 1087 | 672 | 28.3 % | 45.8 % | |
Paniceae | 21166 | 20913 | 247 | 6 | 56.6 % | 58.0 % | |
Setaria | 27796 | 25656 | 2140 | 0 | 82.0 % | 82.0 % | |
Flowering plants (Magnoliopsida) | 8604 | 8505 | 99 | 0 | 59.1 % | 59.1 % | |
Land plants (Embryophyta) | 8117 | 7359 | 676 | 82 | 44.5 % | 49.9 % | |
Land plants (Embryophyta) | 7541 | 7232 | 309 | 0 | 63.3 % | 63.3 % | |
Triticum | 351 | 293 | 58 | 0 | 72.4 % | 72.4 % | |
Green algae (Chlorophyta) | 3159 | 3032 | 127 | 0 | 63.4 % | 63.4 % | |
Red algae (Rhodophyta) | 3120 | 2844 | 154 | 122 | 31.9 % | 57.3 % | |
Red algae (Rhodophyta) | 2145 | 2101 | 44 | 0 | 59.1 % | 59.1 % |