Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Statistics about the gene tree nodes
| Species | # Nodes | # speciation nodes | # duplication nodes | # dubious nodes | Node types | Average duplication confidence score | Average duplication confidence score (non-dubious nodes) |
|---|---|---|---|---|---|---|---|
| Eukaryotes (Eukaryota) | 6580 | 4850 | 1273 | 457 | 22.3 % | 30.3 % | |
| Red algae (Rhodophyta) | 2969 | 2705 | 163 | 101 | 33.0 % | 53.4 % | |
| Cyanidiaceae | 2341 | 2291 | 50 | 0 | 70.0 % | 70.0 % | |
| Eukaryotes (Eukaryota) | 14492 | 11786 | 1923 | 783 | 12.8 % | 18.1 % | |
| Charophyte/embryophyte group (Streptophytina) | 8136 | 6213 | 1416 | 507 | 15.0 % | 20.4 % | |
| Land plants (Embryophyta) | 22530 | 17904 | 3321 | 1305 | 19.4 % | 27.1 % | |
| Vascular plants (Tracheophyta) | 8101 | 6503 | 1425 | 173 | 23.8 % | 26.7 % | |
| Flowering plants (Magnoliopsida) | 112597 | 76942 | 25653 | 10002 | 15.7 % | 21.9 % | |
| Pentapetalae | 106788 | 75986 | 14154 | 16648 | 8.0 % | 17.4 % | |
| Asteridae (asterids) | 117888 | 113115 | 4644 | 129 | 44.4 % | 45.6 % | |
| Oleeae | 41526 | 27939 | 13587 | 0 | 86.1 % | 86.1 % | |
| Nightshade family (Solanaceae) | 48748 | 40743 | 7944 | 61 | 65.6 % | 66.1 % | |
| Solanum | 20983 | 19147 | 1836 | 0 | 72.6 % | 72.6 % | |
| Daisy family (Asteraceae) | 46508 | 39084 | 7424 | 0 | 75.0 % | 75.0 % | |
| Chenopodiaceae | 15980 | 14141 | 1839 | 0 | 76.6 % | 76.6 % | |
| rosids | 76064 | 59153 | 4894 | 12017 | 5.0 % | 17.2 % | |
| fabids | 81151 | 76844 | 2946 | 1361 | 19.6 % | 28.7 % | |
| Benincaseae | 37487 | 34630 | 2857 | 0 | 79.5 % | 79.5 % | |
| Rosales | 46880 | 44325 | 2483 | 72 | 53.6 % | 55.1 % | |
| Amygdaloideae | 18658 | 17762 | 883 | 13 | 56.8 % | 57.7 % | |
| Prunus | 44437 | 39916 | 4521 | 0 | 70.0 % | 70.0 % | |
| 50 kb inversion clade | 103653 | 90658 | 12316 | 679 | 49.5 % | 52.3 % | |
| Phaseoleae | 72962 | 69191 | 3655 | 116 | 56.6 % | 58.3 % | |
| Glycine subgen. Soja | 60831 | 40745 | 20086 | 0 | 91.5 % | 91.5 % | |
| Vigna | 40177 | 39116 | 1061 | 0 | 67.9 % | 67.9 % | |
| Trifolieae | 21907 | 20630 | 1277 | 0 | 69.1 % | 69.1 % | |
| Fabeae | 44505 | 41599 | 2906 | 0 | 69.7 % | 69.7 % | |
| Fagales | 63151 | 54101 | 9050 | 0 | 78.5 % | 78.5 % | |
| Malpighiales | 15207 | 14884 | 323 | 0 | 70.6 % | 70.6 % | |
| malvids | 51959 | 51103 | 814 | 42 | 47.1 % | 49.5 % | |
| Mustard family (Brassicaceae) | 105089 | 89805 | 14936 | 348 | 56.1 % | 57.5 % | |
| Arabidopsis | 48624 | 46299 | 2325 | 0 | 67.1 % | 67.1 % | |
| False flax (Camelina sativa) | 47831 | 44984 | 2847 | 0 | 63.2 % | 63.2 % | |
| Brassica | 183411 | 121809 | 61602 | 0 | 54.3 % | 54.3 % | |
| Mallow family (Malvaceae) | 35100 | 32564 | 2536 | 0 | 55.2 % | 55.2 % | |
| Eucalypteae | 26684 | 20941 | 5743 | 0 | 83.8 % | 83.8 % | |
| Petrosaviidae | 14815 | 11629 | 2049 | 1137 | 19.4 % | 30.1 % | |
| Petrosaviidae | 33543 | 27425 | 2846 | 3272 | 16.0 % | 34.3 % | |
| commelinids | 102469 | 76987 | 21119 | 4363 | 28.6 % | 34.5 % | |
| BEP clade (BOP clade) | 27286 | 25647 | 1179 | 460 | 20.1 % | 27.9 % | |
| Pooideae | 26239 | 22821 | 3203 | 215 | 40.0 % | 42.7 % | |
| Pooideae | 132026 | 107854 | 20796 | 3376 | 36.1 % | 41.9 % | |
| Triticinae | 158793 | 128256 | 24462 | 6075 | 36.6 % | 45.7 % | |
| Triticum | 29735 | 26757 | 1783 | 1195 | 27.4 % | 45.8 % | |
| Triticum | 115445 | 112357 | 3088 | 0 | 61.0 % | 61.0 % | |
| Triticum | 227 | 212 | 15 | 0 | 73.3 % | 73.3 % | |
| Triticum | 115428 | 110746 | 4682 | 0 | 60.3 % | 60.3 % | |
| Triticinae | 59016 | 57522 | 1494 | 0 | 73.1 % | 73.1 % | |
| Oats (Avena sativa) | 78570 | 44927 | 33643 | 0 | 86.1 % | 86.1 % | |
| Oryzinae | 25582 | 22472 | 2272 | 838 | 31.9 % | 43.6 % | |
| Oryza | 22491 | 21361 | 939 | 191 | 34.8 % | 41.8 % | |
| Oryza | 27655 | 24970 | 2094 | 591 | 32.8 % | 42.0 % | |
| Oryza | 95435 | 80176 | 6302 | 8957 | 15.5 % | 37.4 % | |
| Oryza | 42355 | 36829 | 1355 | 4171 | 9.3 % | 38.0 % | |
| Oryza | 37817 | 34285 | 715 | 2817 | 8.9 % | 44.1 % | |
| Oryza | 15882 | 15829 | 53 | 0 | 61.3 % | 61.3 % | |
| Oryza | 18874 | 18708 | 166 | 0 | 56.6 % | 56.6 % | |
| Oryza | 17403 | 17320 | 83 | 0 | 60.8 % | 60.8 % | |
| Eragrostis | 30104 | 23811 | 6293 | 0 | 69.3 % | 69.3 % | |
| Panicoideae | 133365 | 125629 | 7557 | 179 | 53.4 % | 54.7 % | |
| Andropogoneae | 26039 | 19691 | 2510 | 3838 | 13.6 % | 34.4 % | |
| Andropogoneae | 15827 | 15327 | 500 | 0 | 55.4 % | 55.4 % | |
| Fodder cane (Saccharum spontaneum) | 18842 | 17861 | 981 | 0 | 55.7 % | 55.7 % | |
| Green algae (Chlorophyta) | 3141 | 3027 | 114 | 0 | 64.0 % | 64.0 % | |
| Animals and Fungi (Opisthokonta) | 1895 | 1769 | 43 | 83 | 13.6 % | 40.0 % | |
| Bilateral animals (Bilateria) | 6976 | 6022 | 481 | 473 | 25.1 % | 49.8 % | |
| Arthropods and nematodes (Ecdysozoa) | 3652 | 3582 | 70 | 0 | 70.7 % | 70.7 % | |
| Chordates (Chordata) | 4435 | 4256 | 179 | 0 | 66.5 % | 66.5 % |
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