We need your help! Has Ensembl saved you time or effort? Please take 15 minutes to fill in a survey and help EMBL-EBI make the case for why open data resources are critical to life science research.
https://www.surveymonkey.com/r/QGFMBH8?channel=[webpage]

In this section

Statistics on protein trees

The protein tree pipeline is described at the following page.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Liliopsida, eudicotyledons, Amborellales, Embryophyta, Streptophyta, Chlorophyta, Rhodophyta

Favourite species

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)2762826381124712826253
10593027753
Oryza sativa Japonica Group (Oryza sativa Japonica Group reference (Nipponbare) cultivar)3580431701410355331148
1214373133663
Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U))26592650902650
306600
Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D))341243409925034099
10312300
Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A))352393521920235217
28215400
Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B))355233549924235497
30815100
Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex)3582535303522292932374
749418948470
Zea mays (Zea mays strain B73)39756364053351223934166
102152941986147
Physcomitrium patens (Physcomitrium patens strain Gransden 2004)32234233468888330420042
1211041474597

Liliopsida

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Ananas comosus (Ananas comosus strain F153)25783224163367220420212
514074646343
Avena sativa OT3098 (Avena sativa strain OT3098)65023587256298388554840
679512774225
Triticum spelta (component D) (Triticum spelta cultivar Spelta (component D))3769737593104737586
119414200
Triticum spelta (component A) (Triticum spelta cultivar Spelta (component A))37372372541181537239
123416700
Triticum spelta (component B) (Triticum spelta cultivar Spelta (component B))38232380651674338022
158613300
Setaria viridis (Setaria viridis strain A10)3833432843549180232041
184513553665
Avena sativa Sang (Avena sativa strain sang)806008046813212280346
173995941813180
Eragrostis curvula (Eragrostis curvula strain Tanganyika)55182504404742516245278
169595381307586
Saccharum spontaneum (component D) (Saccharum spontaneum strain AP85-441 (component D))130831181112724811763
8689000
Saccharum spontaneum (component C) (Saccharum spontaneum strain AP85-441 (component C))128781158412942211562
7638200
Saccharum spontaneum (component A) (Saccharum spontaneum strain AP85-441 (component A))138441247513694612429
8477200
Saccharum spontaneum (component B) (Saccharum spontaneum strain AP85-441 (component B))134791201214675611956
8047900
Asparagus officinalis (Asparagus officinalis strain DH00/086)24141199954146254017455
52955061598170
Dioscorea rotundata (Dioscorea cayenensis subsp. rotundata)34551279836568481823165
9893620206638
Aegilops umbellulata (Aegilops umbellulata)361043519990520534994
35981028378
Oryza glaberrima (Oryza glaberrima cultivar CG14)331643227489052931745
2435325725100
Oryza barthii (Oryza barthii cultivar IRGC:105608)345753290316727632827
519114787518
Oryza meridionalis (Oryza meridionalis cultivar OR44 (W2112))2930826741256716026581
65794497529
Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U))26592650902650
306600
Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D))341243409925034099
10312300
Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A))352393521920235217
28215400
Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B))355233549924235497
30815100
Oryza rufipogon (Oryza rufipogon cultivar W1943)370713509219796535027
32397506541
Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex)3582535303522292932374
749418948470
Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U))256525521332549
3042400
Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A))31710315201902731493
42123000
Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B))32270320412294831993
71424700
Brachypodium distachyon (Brachypodium distachyon strain Bd21)3431028716559480827908
37806527063
Setaria italica (Setaria italica strain Yugu1)3583130756507517930577
1272397674114
Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11)4074538198254739837800
19464101214222
Oryza sativa Japonica Group (Oryza sativa Japonica Group reference (Nipponbare) cultivar)3580431701410355331148
1214373133663
Leersia perrieri (Leersia perrieri cultivar IRGC:105164)2907826034304454825486
196387346486
Oryza longistaminata (Oryza longistaminata)3168629115257124428871
17731752517502
Zea mays (Zea mays strain B73)39756364053351223934166
102152941986147
Oryza brachyantha (Oryza brachyantha cultivar IRGC:101232)3203725972606556025412
1569189855180
Echinochloa crus-galli (Echinochloa crus-galli reference strain)10378390441133421040280039
5360428610642329
Digitaria exilis (Digitaria exilis strain digitaria_exilis)59843544195424201852401
2412811863280394
Panicum hallii HAL2 (Panicum hallii var. hallii reference (HAL2) ecotype)3326328982428176928213
250612426052
Lolium perenne (Lolium perenne reference strain)38867353053562282832477
6909295854605
Oryza punctata (Oryza punctata cultivar IRGC:105690)3176228510325240228108
193085351546
Triticum urartu (Triticum urartu strain G1812 (PI428198))4144936320512981835502
3642276124852
Secale cereale (Secale cereale)34441344093211034299
46778121246
Triticum timopheevii (component A) (Triticum timopheevii (component A))77908724675441293069537
1538934500
Triticum timopheevii (component B) (Triticum timopheevii (component B))84605787395866342775312
2032533800
Sorghum bicolor (Sorghum bicolor strain BTx623)3411829647447179028857
24803530595
Oryza glumipatula (Oryza glumipatula)357353338923465233337
316156589469
Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78)3961438570104450838062
3135179677124
Eragrostis tef (Eragrostis tef cultivar Dabbi)65879606065273244758159
2426261011601499
Oryza nivara (Oryza nivara cultivar IRGC:100897)363133442618874734379
32199486526
Musa acuminata (Musa acuminata subsp. malaccensis cultivar Doubled-haploid Pahang (DH-Pahang))3501231774323852431250
1433023266259
Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A))30726299297979229837
70327500
Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B))3184330811103215630655
109328700

Eudicotyledons

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Malus domestica Golden (Malus domestica strain Golden Delicious)40624372603364102936231
145458001790156
Cannabis sativa female (Cannabis sativa)27236239303306394019990
703281599368
Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5)330443247457023332241
1359615286746
Prunus avium (Prunus avium strain Satonishiki)42794383584436674331615
121946081728452
Sesamum indicum (Sesamum indicum strain Zhongzhi No. 13)25172233491823196221387
6264227466162
Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334)35845344571388283031627
93996821917173
Citrullus lanatus (Citrullus lanatus strain 97103)2254119730281113319597
65619630378
Coffea canephora (Coffea canephora strain DH200-94)2557423696187855123145
5032332103560
Prunus dulcis (Prunus dulcis strain Texas)2796326648131536326285
275124757395
Quercus lobata (Quercus lobata)3936638345102157837767
81586061484233
Ipomoea triloba (Ipomoea triloba strain NCNSP0323)31358292282130126527963
9964316651212
Arabis alpina (Arabis alpina)21609200241585171318311
305032492114
Pistacia vera (Pistacia vera strain Batoury)3178430420136454529875
9572124102044
Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302)32158306351523149929136
3188115759278
Gossypium raimondii (Gossypium raimondii)3820835993221588835105
1320935683244
Rosa chinensis (Rosa chinensis)45464378447620387733967
124151234211896
Cynara cardunculus (Cynara cardunculus var. scolymus)2650524770173557124199
2511190801417
Chenopodium quinoa (Chenopodium quinoa strain PI614886)3442633485941168931796
15002410981392
Eutrema salsugineum (Eutrema salsugineum)265282576776130825459
239321944350
Eucalyptus grandis (Eucalyptus grandis strain BRASUZ1)3677932715406441232303
8087799129649
Kalanchoe fedtschenkoi (Kalanchoe fedtschenkoi)30961280672894127526792
991815298865
Citrus clementina (Citrus x clementina strain Clemenules)2500023507149333523172
427251772650
Cucumis melo (Cucumis melo)28299239374362325320684
378918550572
Camelina sativa (component G3) (Camelina sativa strain dh55 (component G3))291742818598919627989
169422200
Camelina sativa (component G1) (Camelina sativa strain dh55 (component G1))28205272309756227168
112622700
Camelina sativa (component G2) (Camelina sativa strain dh55 (component G2))27772268559177726778
100827600
Vigna angularis (Vigna angularis strain Jingnong 6)33860312142646511826096
6330241905118
Sphenostylis stenocarpa (Sphenostylis stenocarpa)3077226245452795025295
22056731009249
Medicago truncatula (Medicago truncatula)44450382866164217036116
90001204150169
Lupinus angustifolius (Lupinus angustifolius strain Tanjil)3307431861121363231229
11067118625297
Daucus carota (Daucus carota subsp. sativus strain DH1)32109292792830322626053
11048225837321
Manihot esculenta (Manihot esculenta)3280431263154186230401
114154924836
Theobroma cacao Matina 1-6 (Theobroma cacao reference (Matina) cultivar)29188253073881162723680
400059232116
Ficus carica (Ficus carica cultivar Dottato)37684292698415364325626
83166131301142
Helianthus annuus (Helianthus annuus cultivar XRQ/B)7086458136127281189546241
275651487281260
Quercus suber (Quercus suber reference strain)52739474615278633441127
1514310092415335
Vigna unguiculata (Vigna unguiculata strain IT97K-499-35)3181230158165489929259
437014327538
Nicotiana attenuata (Nicotiana attenuata strain UT)33320321181202304529073
740216077195
Cucumis sativus (Cucumis sativus strain 9930)2378020773300714620627
64942060050
Juglans regia (Juglans regia cultivar Chandler)4048739958529120738751
2009016993534
Lactuca sativa (Lactuca sativa cultivar Salinas)38293344473846376530682
94042081406117
Brassica juncea (Brassica juncea cultivar Sichuan Huangzi)75016693945622261266782
90326752055943
Fraxinus excelsior (Fraxinus excelsior reference strain)3881437249156521037039
34584182016169
Corylus avellana (Corylus avellana cultivar Tombul)257322493979396323976
66385361563405
Vicia faba (Vicia faba)34221317782443109730681
6808376124891
Brassica rapa R-o-18 (Brassica rapa subsp. trilocularis cultivar R-o-18)43129414961633226339233
5866120830998
Phaseolus vulgaris (Phaseolus vulgaris strain G19833)281342723190322527006
254358864025
Lathyrus sativus (Lathyrus sativus)3171930946773107229874
683730084143
Corchorus capsularis (Corchorus capsularis strain CVL-1)29356218487508166720181
319556639495
Corymbia citriodora (Corymbia citriodora subsp. variegata genotype CCV2-018)3562833931169753633395
840226564846
Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47)3266730565210277529790
2833110768140
Vigna radiata (Vigna radiata var. radiata strain VC1973A)223682147689211421362
88491747304
Brassica napus (Brassica napus strain Darmor-bzh)101040952525788170393549
1217514203885421
Olea europaea (Olea europaea subsp. europaea variety Farga)55576500125564429745715
134708692451140
Pisum sativum (Pisum sativum cultivar Cameor)43691370146677545631558
94893301452163
Prunus persica (Prunus persica strain Lovell)2687325312156114925163
11277142167
Arachis hypogaea (Arachis hypogaea)824037819842051369764501
486374343003274
Cajanus cajan (pigeon pea) - GCA_000340665.1 (Cajanus cajan)48618471931425546241731
18383412105187
Populus trichocarpa (Populus trichocarpa)3469932576212365431922
1291313841337
Solanum tuberosum (Solanum tuberosum cultivar DM 1-3 516 R44)39021354243597644128983
9202294128692
Trifolium pratense (Trifolium pratense strain Milvus B)39917361723745138334789
68516702478276
Glycine max (Glycine max strain Williams 82)5589751772412560851164
3521196152187
Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH)2652120854566787319981
25575737579
Arabidopsis thaliana (Arabidopsis thaliana strain Columbia)2762826381124712826253
10593027753
Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706)34429296014828124328358
37914331024494
Brassica oleracea (Brassica oleracea var. oleracea strain TO1000)59220574401780175655684
73336212180411
Glycine soja (Wild soybean) (Glycine soja)4716246768394136445404
332412177881
Vitis vinifera (Vitis vinifera)37480360961384396232134
14083839802223

Amborellales

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Amborella trichopoda (Amborella trichopoda)27313215415772357417967
5540599118857

Embryophyta

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Papaver somniferum (Papaver somniferum strain High Noscapine 1 (HN1))41770361655605392332242
191601991398473
Nymphaea colorata (Nymphaea colorata strain Beijing-Zhang1983)28438241734265408220091
86883171091652
Marchantia polymorpha (Marchantia polymorpha)18004133684636135312015
357712138306
Physcomitrium patens (Physcomitrium patens strain Gransden 2004)32234233468888330420042
1211041474597
Selaginella moellendorffii (Selaginella moellendorffii)34799332791520639926880
21335901815306

Streptophyta

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Chara braunii (Chara braunii strain S276)347183042642921580014626
219411243401242

Chlorophyta

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+)1774312359538436058754
5198421601068
Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901)7603523723663644873
5981033252

Rhodophyta

Species# Genes# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Split genes# short genes# Long genesGene QC
Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D)4973356714061273440
240064176
Chondrus crispus (Chondrus crispus strain Stackhouse)98075782402514104372
180642243167
Galdieria sulphuraria (Galdieria sulphuraria strain 074W)6622499716256694328
96814142135