Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Statistics about the gene tree nodes
| Species | # Nodes | # speciation nodes | # duplication nodes | # dubious nodes | Node types | Average duplication confidence score | Average duplication confidence score (non-dubious nodes) |
|---|---|---|---|---|---|---|---|
| Eukaryotes (Eukaryota) | 14130 | 10937 | 2290 | 903 | 17.8 % | 24.8 % | |
| Animals and Fungi (Opisthokonta) | 1883 | 1776 | 54 | 53 | 20.9 % | 41.5 % | |
| Bilateral animals (Bilateria) | 6931 | 6003 | 479 | 449 | 25.7 % | 49.7 % | |
| Chordates (Chordata) | 4470 | 4302 | 168 | 0 | 68.5 % | 68.5 % | |
| Arthropods and nematodes (Ecdysozoa) | 3664 | 3590 | 74 | 0 | 71.6 % | 71.6 % | |
| Red algae (Rhodophyta) | 2888 | 2634 | 144 | 110 | 30.2 % | 53.4 % | |
| Bangiophyceae | 2236 | 2195 | 41 | 0 | 72.0 % | 72.0 % | |
| Green plants (Viridiplantae) | 7237 | 5861 | 1040 | 336 | 14.6 % | 19.3 % | |
| Charophyte/embryophyte group (Streptophytina) | 8351 | 6271 | 1465 | 615 | 15.5 % | 22.0 % | |
| Land plants (Embryophyta) | 22481 | 17957 | 3200 | 1324 | 19.4 % | 27.5 % | |
| Vascular plants (Tracheophyta) | 8263 | 6543 | 1472 | 248 | 21.4 % | 25.1 % | |
| Flowering plants (Magnoliopsida) | 25680 | 14087 | 8191 | 3402 | 17.6 % | 25.0 % | |
| Flowering plants (Magnoliopsida) | 79003 | 49015 | 18160 | 11828 | 11.0 % | 18.2 % | |
| Mesangiospermae | 36190 | 31817 | 3347 | 1026 | 24.7 % | 32.3 % | |
| commelinids | 15177 | 13770 | 1197 | 210 | 29.3 % | 34.4 % | |
| Poales | 12356 | 11240 | 996 | 120 | 32.3 % | 36.2 % | |
| Grass family (Poaceae) | 61263 | 38733 | 17060 | 5470 | 25.1 % | 33.2 % | |
| PACMAD clade | 35036 | 29633 | 4718 | 685 | 31.2 % | 35.7 % | |
| Panicoideae | 30226 | 27505 | 2239 | 482 | 28.5 % | 34.6 % | |
| Andropogoneae | 41619 | 38974 | 2514 | 131 | 39.5 % | 41.6 % | |
| Fodder cane (Saccharum spontaneum) | 18939 | 17943 | 996 | 0 | 55.6 % | 55.6 % | |
| Paniceae | 73640 | 70718 | 2892 | 30 | 51.6 % | 52.2 % | |
| Setaria | 27907 | 25765 | 2142 | 0 | 81.7 % | 81.7 % | |
| Eragrostis | 30009 | 23799 | 6210 | 0 | 69.3 % | 69.3 % | |
| BEP clade (BOP clade) | 26233 | 24720 | 1055 | 458 | 18.5 % | 26.6 % | |
| Pooideae | 62631 | 53069 | 8558 | 1004 | 32.9 % | 36.7 % | |
| Triticeae | 55995 | 35360 | 12611 | 8024 | 23.7 % | 38.7 % | |
| Hordeinae | 14277 | 14197 | 80 | 0 | 61.9 % | 61.9 % | |
| Triticinae | 158526 | 128000 | 24445 | 6081 | 36.7 % | 45.9 % | |
| Triticinae | 59077 | 57551 | 1526 | 0 | 73.2 % | 73.2 % | |
| Triticum | 217 | 206 | 11 | 0 | 72.7 % | 72.7 % | |
| Triticum | 29615 | 26711 | 1756 | 1148 | 27.5 % | 45.5 % | |
| Triticum | 115574 | 112524 | 3050 | 0 | 61.1 % | 61.1 % | |
| Triticum | 115487 | 110783 | 4704 | 0 | 59.9 % | 59.9 % | |
| Poeae | 23737 | 21553 | 2117 | 67 | 50.0 % | 51.6 % | |
| Oats (Avena sativa) | 72434 | 42560 | 26283 | 3591 | 32.7 % | 37.2 % | |
| Oats (Avena sativa) | 18842 | 17332 | 1510 | 0 | 61.9 % | 61.9 % | |
| Oryzinae | 24518 | 22346 | 1970 | 202 | 42.3 % | 46.7 % | |
| Oryza | 261280 | 245280 | 10659 | 5341 | 30.5 % | 45.8 % | |
| Asian cultivated rice (Oryza sativa) | 17894 | 17723 | 171 | 0 | 57.9 % | 57.9 % | |
| Pentapetalae | 114338 | 80061 | 15593 | 18684 | 7.8 % | 17.2 % | |
| rosids | 79193 | 60949 | 5415 | 12829 | 5.7 % | 19.1 % | |
| fabids | 80849 | 76460 | 2786 | 1603 | 17.8 % | 28.1 % | |
| Benincaseae | 19936 | 17599 | 2312 | 25 | 78.5 % | 79.3 % | |
| Cucumis | 17525 | 17001 | 524 | 0 | 76.8 % | 76.8 % | |
| Rosales | 25777 | 25126 | 616 | 35 | 55.3 % | 58.4 % | |
| Rose family (Rosaceae) | 20602 | 18762 | 1774 | 66 | 52.6 % | 54.5 % | |
| Amygdaloideae | 18645 | 17755 | 881 | 9 | 58.1 % | 58.7 % | |
| Prunus | 44349 | 39915 | 4434 | 0 | 70.6 % | 70.6 % | |
| 50 kb inversion clade | 51597 | 42096 | 8236 | 1265 | 42.4 % | 48.9 % | |
| NPAAA clade | 25619 | 24075 | 1319 | 225 | 31.0 % | 36.3 % | |
| Phaseoleae | 118031 | 113598 | 4253 | 180 | 51.1 % | 53.2 % | |
| Vigna | 39995 | 39017 | 978 | 0 | 66.7 % | 66.7 % | |
| Glycine subgen. Soja | 60873 | 40749 | 20124 | 0 | 91.4 % | 91.4 % | |
| IRL clade | 27939 | 24228 | 3273 | 438 | 40.2 % | 45.5 % | |
| Trifolieae | 21865 | 20595 | 1270 | 0 | 68.0 % | 68.0 % | |
| Fabeae | 47513 | 43940 | 3530 | 43 | 62.0 % | 62.8 % | |
| Garden pea (Pisum sativum) | 56238 | 49928 | 6310 | 0 | 74.1 % | 74.1 % | |
| Malpighiales | 15172 | 14870 | 302 | 0 | 71.7 % | 71.7 % | |
| Fagales | 31039 | 30080 | 952 | 7 | 56.4 % | 56.8 % | |
| Quercus | 31894 | 23843 | 8051 | 0 | 80.9 % | 80.9 % | |
| malvids | 34649 | 34076 | 477 | 96 | 29.3 % | 35.2 % | |
| Mustard family (Brassicaceae) | 77485 | 64499 | 12650 | 336 | 56.5 % | 58.0 % | |
| Brassica | 183334 | 121724 | 61610 | 0 | 54.2 % | 54.2 % | |
| Camelineae | 27084 | 24683 | 2257 | 144 | 46.1 % | 49.1 % | |
| Arabidopsis | 48735 | 46345 | 2390 | 0 | 67.2 % | 67.2 % | |
| False flax (Camelina sativa) | 47876 | 44989 | 2887 | 0 | 63.2 % | 63.2 % | |
| Eucalypteae | 26584 | 20892 | 5692 | 0 | 83.4 % | 83.4 % | |
| Sapindales | 15411 | 15067 | 344 | 0 | 71.2 % | 71.2 % | |
| Mallow family (Malvaceae) | 34949 | 32480 | 2469 | 0 | 55.4 % | 55.4 % | |
| Asteridae (asterids) | 37714 | 35332 | 1340 | 1042 | 14.9 % | 26.6 % | |
| lamiids | 34913 | 33536 | 1031 | 346 | 26.0 % | 34.8 % | |
| Solanales | 14951 | 14451 | 494 | 6 | 54.1 % | 54.8 % | |
| Nightshade family (Solanaceae) | 48628 | 40704 | 7862 | 62 | 65.8 % | 66.3 % | |
| Solanum | 21065 | 19154 | 1911 | 0 | 72.2 % | 72.2 % | |
| Lamiales | 14935 | 13813 | 1117 | 5 | 67.0 % | 67.3 % | |
| Oleeae | 41671 | 27905 | 13766 | 0 | 85.9 % | 85.9 % | |
| campanulids | 10471 | 10289 | 180 | 2 | 45.5 % | 46.0 % | |
| Daisy family (Asteraceae) | 46403 | 38989 | 7414 | 0 | 74.8 % | 74.8 % | |
| Chenopodiaceae | 16001 | 14156 | 1845 | 0 | 76.5 % | 76.5 % | |
| Green algae (Chlorophyta) | 3171 | 3053 | 118 | 0 | 62.7 % | 62.7 % |
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