Statistics on protein trees
The protein tree pipeline is described at the following page.
This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:- Overview
- Gene tree coverage and Gene QC for each species
- Size of gene trees (split by their root taxon)
- Gene tree nodes, and the inference of speciation / duplication events
Gene tree coverage and Gene QC (per species)
Quick links: Liliopsida, eudicotyledons, Amborellales, Embryophyta, Streptophyta, Chlorophyta, Rhodophyta
Favourite species
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Arabidopsis thaliana (Arabidopsis thaliana strain Columbia) | 27628 | 26375 | 1253 | 133 | 26242 | 1048 | 29 | 283 | 58 | ||
| Oryza sativa Japonica Group (Oryza sativa Japonica Group reference (Nipponbare) cultivar) | 35804 | 31699 | 4105 | 562 | 31137 | 1233 | 378 | 1292 | 67 | ||
| Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A)) | 35239 | 35221 | 18 | 2 | 35219 | 284 | 143 | 0 | 0 | ||
| Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U)) | 2659 | 2646 | 13 | 0 | 2646 | 309 | 8 | 0 | 0 | ||
| Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D)) | 34124 | 34100 | 24 | 0 | 34100 | 98 | 119 | 0 | 0 | ||
| Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B)) | 35523 | 35503 | 20 | 2 | 35501 | 299 | 141 | 0 | 0 | ||
| Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex) | 35825 | 35296 | 529 | 3025 | 32271 | 7481 | 196 | 501 | 76 | ||
| Zea mays (Zea mays strain B73) | 39756 | 36407 | 3349 | 2211 | 34196 | 10263 | 282 | 1981 | 141 | ||
| Physcomitrium patens (Physcomitrium patens strain Gransden 2004) | 32234 | 23342 | 8892 | 3300 | 20042 | 12087 | 42 | 478 | 602 |
Liliopsida
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ananas comosus (Ananas comosus strain F153) | 25783 | 22419 | 3364 | 2194 | 20225 | 5119 | 76 | 648 | 358 | ||
| Saccharum spontaneum (component B) (Saccharum spontaneum strain AP85-441 (component B)) | 13479 | 12015 | 1464 | 60 | 11955 | 801 | 77 | 0 | 0 | ||
| Saccharum spontaneum (component D) (Saccharum spontaneum strain AP85-441 (component D)) | 13083 | 11818 | 1265 | 50 | 11768 | 869 | 90 | 0 | 0 | ||
| Saccharum spontaneum (component C) (Saccharum spontaneum strain AP85-441 (component C)) | 12878 | 11591 | 1287 | 22 | 11569 | 761 | 84 | 0 | 0 | ||
| Saccharum spontaneum (component A) (Saccharum spontaneum strain AP85-441 (component A)) | 13844 | 12476 | 1368 | 44 | 12432 | 834 | 69 | 0 | 0 | ||
| Eragrostis curvula (Eragrostis curvula strain Tanganyika) | 55182 | 50446 | 4736 | 5165 | 45281 | 16987 | 510 | 1347 | 620 | ||
| Setaria viridis (Setaria viridis strain A10) | 38334 | 32845 | 5489 | 816 | 32029 | 1850 | 143 | 525 | 76 | ||
| Triticum spelta (component A) (Triticum spelta cultivar Spelta (component A)) | 37372 | 37251 | 121 | 23 | 37228 | 1227 | 151 | 0 | 0 | ||
| Triticum spelta (component D) (Triticum spelta cultivar Spelta (component D)) | 37697 | 37590 | 107 | 12 | 37578 | 1240 | 134 | 0 | 0 | ||
| Triticum spelta (component B) (Triticum spelta cultivar Spelta (component B)) | 38232 | 38071 | 161 | 60 | 38011 | 1587 | 124 | 0 | 0 | ||
| Dioscorea rotundata (Dioscorea cayenensis subsp. rotundata) | 34551 | 27987 | 6564 | 4807 | 23180 | 9870 | 635 | 2103 | 43 | ||
| Asparagus officinalis (Asparagus officinalis strain DH00/086) | 24141 | 20004 | 4137 | 2544 | 17460 | 5259 | 513 | 1592 | 175 | ||
| Avena sativa OT3098 (Avena sativa strain OT3098) | 65023 | 58729 | 6294 | 3914 | 54815 | 6814 | 16 | 753 | 241 | ||
| Avena sativa Sang (Avena sativa strain sang) | 80600 | 80466 | 134 | 121 | 80345 | 17468 | 598 | 1795 | 184 | ||
| Aegilops umbellulata (Aegilops umbellulata) | 36104 | 35212 | 892 | 219 | 34993 | 3639 | 14 | 319 | 100 | ||
| Oryza glaberrima (Oryza glaberrima cultivar CG14) | 33164 | 32266 | 898 | 527 | 31739 | 2433 | 327 | 722 | 112 | ||
| Oryza barthii (Oryza barthii cultivar IRGC:105608) | 34575 | 32905 | 1670 | 76 | 32829 | 523 | 111 | 781 | 536 | ||
| Oryza meridionalis (Oryza meridionalis cultivar OR44 (W2112)) | 29308 | 26743 | 2565 | 157 | 26586 | 653 | 96 | 502 | 523 | ||
| Triticum aestivum (component A) (Triticum aestivum reference (Chinese spring) cultivar (component A)) | 35239 | 35221 | 18 | 2 | 35219 | 284 | 143 | 0 | 0 | ||
| Triticum aestivum (component U) (Triticum aestivum reference (Chinese spring) cultivar (component U)) | 2659 | 2646 | 13 | 0 | 2646 | 309 | 8 | 0 | 0 | ||
| Triticum aestivum (component D) (Triticum aestivum reference (Chinese spring) cultivar (component D)) | 34124 | 34100 | 24 | 0 | 34100 | 98 | 119 | 0 | 0 | ||
| Triticum aestivum (component B) (Triticum aestivum reference (Chinese spring) cultivar (component B)) | 35523 | 35503 | 20 | 2 | 35501 | 299 | 141 | 0 | 0 | ||
| Oryza rufipogon (Oryza rufipogon cultivar W1943) | 37071 | 35085 | 1986 | 61 | 35024 | 323 | 103 | 484 | 563 | ||
| Hordeum vulgare (Hordeum vulgare subsp. vulgare cultivar Morex) | 35825 | 35296 | 529 | 3025 | 32271 | 7481 | 196 | 501 | 76 | ||
| Triticum turgidum (component A) (Triticum turgidum subsp. durum strain svevo (component A)) | 31710 | 31516 | 194 | 28 | 31488 | 428 | 232 | 0 | 0 | ||
| Triticum turgidum (component U) (Triticum turgidum subsp. durum strain svevo (component U)) | 2565 | 2551 | 14 | 3 | 2548 | 299 | 22 | 0 | 0 | ||
| Triticum turgidum (component B) (Triticum turgidum subsp. durum strain svevo (component B)) | 32270 | 32039 | 231 | 63 | 31976 | 709 | 229 | 0 | 0 | ||
| Brachypodium distachyon (Brachypodium distachyon strain Bd21) | 34310 | 28708 | 5602 | 834 | 27874 | 3811 | 61 | 270 | 68 | ||
| Setaria italica (Setaria italica strain Yugu1) | 35831 | 30760 | 5071 | 184 | 30576 | 1292 | 405 | 688 | 113 | ||
| Oryza sativa Indica Group (Oryza sativa Indica Group strain 93-11) | 40745 | 38201 | 2544 | 406 | 37795 | 1920 | 415 | 1233 | 239 | ||
| Oryza sativa Japonica Group (Oryza sativa Japonica Group reference (Nipponbare) cultivar) | 35804 | 31699 | 4105 | 562 | 31137 | 1233 | 378 | 1292 | 67 | ||
| Leersia perrieri (Leersia perrieri cultivar IRGC:105164) | 29078 | 26035 | 3043 | 539 | 25496 | 1962 | 75 | 319 | 509 | ||
| Oryza longistaminata (Oryza longistaminata) | 31686 | 29119 | 2567 | 242 | 28877 | 1775 | 194 | 2550 | 530 | ||
| Zea mays (Zea mays strain B73) | 39756 | 36407 | 3349 | 2211 | 34196 | 10263 | 282 | 1981 | 141 | ||
| Oryza brachyantha (Oryza brachyantha cultivar IRGC:101232) | 32037 | 25977 | 6060 | 563 | 25414 | 1558 | 174 | 842 | 195 | ||
| Echinochloa crus-galli (Echinochloa crus-galli reference strain) | 103783 | 90445 | 13338 | 10411 | 80034 | 53584 | 291 | 1129 | 2337 | ||
| Digitaria exilis (Digitaria exilis strain digitaria_exilis) | 59843 | 54438 | 5405 | 2005 | 52433 | 24159 | 1193 | 3258 | 428 | ||
| Panicum hallii HAL2 (Panicum hallii var. hallii reference (HAL2) ecotype) | 33263 | 28976 | 4287 | 764 | 28212 | 2500 | 122 | 249 | 63 | ||
| Lolium perenne (Lolium perenne reference strain) | 38867 | 35303 | 3564 | 2840 | 32463 | 6922 | 295 | 831 | 624 | ||
| Oryza punctata (Oryza punctata cultivar IRGC:105690) | 31762 | 28510 | 3252 | 402 | 28108 | 1938 | 94 | 327 | 534 | ||
| Triticum urartu (Triticum urartu strain G1812 (PI428198)) | 41449 | 36324 | 5125 | 819 | 35505 | 3650 | 279 | 1300 | 78 | ||
| Secale cereale (Secale cereale) | 34441 | 34410 | 31 | 125 | 34285 | 4680 | 75 | 211 | 81 | ||
| Triticum timopheevii (component A) (Triticum timopheevii (component A)) | 77908 | 72506 | 5402 | 2835 | 69671 | 15217 | 353 | 0 | 0 | ||
| Triticum timopheevii (component B) (Triticum timopheevii (component B)) | 84605 | 78742 | 5863 | 3563 | 75179 | 20298 | 339 | 0 | 0 | ||
| Sorghum bicolor (Sorghum bicolor strain BTx623) | 34118 | 29659 | 4459 | 842 | 28817 | 2503 | 39 | 283 | 99 | ||
| Oryza glumipatula (Oryza glumipatula) | 35735 | 33390 | 2345 | 52 | 33338 | 324 | 170 | 597 | 491 | ||
| Aegilops tauschii (Aegilops tauschii subsp. strangulata strain AL8/78) | 39614 | 38577 | 1037 | 545 | 38032 | 3146 | 174 | 733 | 132 | ||
| Eragrostis tef (Eragrostis tef cultivar Dabbi) | 65879 | 60607 | 5272 | 2416 | 58191 | 24238 | 633 | 1186 | 1580 | ||
| Oryza nivara (Oryza nivara cultivar IRGC:100897) | 36313 | 34426 | 1887 | 50 | 34376 | 319 | 107 | 473 | 539 | ||
| Musa acuminata (Musa acuminata subsp. malaccensis cultivar Doubled-haploid Pahang (DH-Pahang)) | 35012 | 31774 | 3238 | 536 | 31238 | 14341 | 235 | 682 | 52 | ||
| Triticum dicoccoides (component A) (Triticum dicoccoides strain Zavitan (Atlit2015) (component A)) | 30726 | 29931 | 795 | 94 | 29837 | 716 | 274 | 0 | 0 | ||
| Triticum dicoccoides (component B) (Triticum dicoccoides strain Zavitan (Atlit2015) (component B)) | 31843 | 30810 | 1033 | 152 | 30658 | 1075 | 283 | 0 | 0 |
Eudicotyledons
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Gossypium raimondii (Gossypium raimondii) | 38208 | 35996 | 2212 | 877 | 35119 | 13195 | 360 | 819 | 48 | ||
| Eutrema salsugineum (Eutrema salsugineum) | 26528 | 25765 | 763 | 304 | 25461 | 2375 | 227 | 431 | 55 | ||
| Coffea canephora (Coffea canephora strain DH200-94) | 25574 | 23684 | 1890 | 550 | 23134 | 5011 | 344 | 1046 | 76 | ||
| Cucumis melo (Cucumis melo) | 28299 | 23931 | 4368 | 3246 | 20685 | 3800 | 194 | 522 | 74 | ||
| Prunus dulcis (Prunus dulcis strain Texas) | 27963 | 26653 | 1310 | 382 | 26271 | 2785 | 261 | 593 | 103 | ||
| Actinidia chinensis (Actinidia chinensis var. chinensis strain Red5) | 33044 | 32476 | 568 | 247 | 32229 | 13522 | 151 | 912 | 59 | ||
| Ipomoea triloba (Ipomoea triloba strain NCNSP0323) | 31358 | 29227 | 2131 | 1248 | 27979 | 9991 | 326 | 666 | 215 | ||
| Sesamum indicum (Sesamum indicum strain Zhongzhi No. 13) | 25172 | 23362 | 1810 | 1936 | 21426 | 6249 | 233 | 455 | 173 | ||
| Chenopodium quinoa (Chenopodium quinoa strain PI614886) | 34426 | 33486 | 940 | 1666 | 31820 | 15038 | 401 | 969 | 388 | ||
| Kalanchoe fedtschenkoi (Kalanchoe fedtschenkoi) | 30961 | 28062 | 2899 | 1257 | 26805 | 9951 | 157 | 970 | 42 | ||
| Citrullus lanatus (Citrullus lanatus strain 97103) | 22541 | 19733 | 2808 | 131 | 19602 | 663 | 194 | 323 | 84 | ||
| Capsicum annuum (Capsicum annuum strain Criollo de Morelos 334) | 35845 | 34464 | 1381 | 2839 | 31625 | 9311 | 653 | 1924 | 183 | ||
| Prunus avium (Prunus avium strain Satonishiki) | 42794 | 38370 | 4424 | 6905 | 31465 | 12295 | 532 | 1733 | 459 | ||
| Malus domestica Golden (Malus domestica strain Golden Delicious) | 40624 | 37256 | 3368 | 1042 | 36214 | 14511 | 795 | 1817 | 153 | ||
| Quercus lobata (Quercus lobata) | 39366 | 38345 | 1021 | 592 | 37753 | 8160 | 604 | 1555 | 256 | ||
| Arabidopsis halleri (Arabidopsis halleri subsp. gemmifera strain W302) | 32158 | 30637 | 1521 | 1565 | 29072 | 3186 | 121 | 735 | 287 | ||
| Eucalyptus grandis (Eucalyptus grandis strain BRASUZ1) | 36779 | 32725 | 4054 | 396 | 32329 | 8049 | 824 | 1342 | 54 | ||
| Pistacia vera (Pistacia vera strain Batoury) | 31784 | 30416 | 1368 | 543 | 29873 | 9579 | 131 | 1025 | 51 | ||
| Camelina sativa (component G2) (Camelina sativa strain dh55 (component G2)) | 27772 | 26858 | 914 | 76 | 26782 | 1017 | 275 | 0 | 0 | ||
| Camelina sativa (component G1) (Camelina sativa strain dh55 (component G1)) | 28205 | 27233 | 972 | 68 | 27165 | 1142 | 222 | 0 | 0 | ||
| Camelina sativa (component G3) (Camelina sativa strain dh55 (component G3)) | 29174 | 28192 | 982 | 194 | 27998 | 1676 | 230 | 0 | 0 | ||
| Cannabis sativa female (Cannabis sativa) | 27236 | 23932 | 3304 | 3945 | 19987 | 7141 | 91 | 603 | 395 | ||
| Cynara cardunculus (Cynara cardunculus var. scolymus) | 26505 | 24777 | 1728 | 574 | 24203 | 2484 | 180 | 846 | 436 | ||
| Arabis alpina (Arabis alpina) | 21609 | 20035 | 1574 | 1750 | 18285 | 3082 | 34 | 495 | 106 | ||
| Citrus clementina (Citrus clementina strain Clemenules) | 25000 | 23514 | 1486 | 339 | 23175 | 4275 | 523 | 762 | 54 | ||
| Rosa chinensis (Rosa chinensis) | 45464 | 37827 | 7637 | 3887 | 33940 | 12381 | 1237 | 2107 | 92 | ||
| Vigna angularis (Vigna angularis strain Jingnong 6) | 33860 | 31178 | 2682 | 5080 | 26098 | 6318 | 238 | 945 | 123 | ||
| Medicago truncatula (Medicago truncatula) | 44450 | 38260 | 6190 | 2177 | 36083 | 9050 | 1172 | 1632 | 82 | ||
| Lupinus angustifolius (Lupinus angustifolius strain Tanjil) | 33074 | 31859 | 1215 | 624 | 31235 | 11059 | 122 | 638 | 298 | ||
| Daucus carota (Daucus carota subsp. sativus strain DH1) | 32109 | 29283 | 2826 | 3238 | 26045 | 11020 | 214 | 886 | 333 | ||
| Manihot esculenta (Manihot esculenta) | 32804 | 31264 | 1540 | 881 | 30383 | 11409 | 57 | 280 | 49 | ||
| Theobroma cacao Matina 1-6 (Theobroma cacao reference (Matina) cultivar) | 29188 | 25313 | 3875 | 1611 | 23702 | 4007 | 62 | 251 | 122 | ||
| Ficus carica (Ficus carica cultivar Dottato) | 37684 | 29270 | 8414 | 3666 | 25604 | 8252 | 612 | 1315 | 157 | ||
| Helianthus annuus (Helianthus annuus cultivar XRQ/B) | 70864 | 58158 | 12706 | 11866 | 46292 | 27546 | 1493 | 2837 | 60 | ||
| Quercus suber (Quercus suber reference strain) | 52739 | 47474 | 5265 | 6268 | 41206 | 15124 | 1002 | 2490 | 340 | ||
| Vigna unguiculata (Vigna unguiculata strain IT97K-499-35) | 31812 | 30146 | 1666 | 900 | 29246 | 4416 | 155 | 315 | 46 | ||
| Nicotiana attenuata (Nicotiana attenuata strain UT) | 33320 | 32117 | 1203 | 2995 | 29122 | 7379 | 161 | 790 | 97 | ||
| Cucumis sativus (Cucumis sativus strain 9930) | 23780 | 20772 | 3008 | 150 | 20622 | 625 | 416 | 630 | 51 | ||
| Juglans regia (Juglans regia cultivar Chandler) | 40487 | 39951 | 536 | 1140 | 38811 | 20167 | 167 | 947 | 45 | ||
| Brassica juncea (Brassica juncea cultivar Sichuan Huangzi) | 75016 | 69401 | 5615 | 2742 | 66659 | 9038 | 635 | 2042 | 946 | ||
| Lactuca sativa (Lactuca sativa cultivar Salinas) | 38293 | 34445 | 3848 | 3770 | 30675 | 9374 | 185 | 1469 | 120 | ||
| Fraxinus excelsior (Fraxinus excelsior reference strain) | 38814 | 37256 | 1558 | 212 | 37044 | 3516 | 421 | 2045 | 181 | ||
| Corylus avellana (Corylus avellana cultivar Tombul) | 25732 | 24927 | 805 | 942 | 23985 | 6614 | 536 | 1586 | 414 | ||
| Vicia faba (Vicia faba) | 34221 | 31774 | 2447 | 1099 | 30675 | 6804 | 356 | 1312 | 108 | ||
| Brassica rapa R-o-18 (Brassica rapa subsp. trilocularis cultivar R-o-18) | 43129 | 41481 | 1648 | 2282 | 39199 | 5869 | 122 | 808 | 1031 | ||
| Phaseolus vulgaris (Phaseolus vulgaris strain G19833) | 28134 | 27216 | 918 | 241 | 26975 | 2558 | 591 | 665 | 25 | ||
| Lathyrus sativus (Lathyrus sativus) | 31719 | 30944 | 775 | 1031 | 29913 | 6772 | 302 | 887 | 48 | ||
| Corchorus capsularis (Corchorus capsularis strain CVL-1) | 29356 | 21836 | 7520 | 1680 | 20156 | 3218 | 60 | 651 | 496 | ||
| Corymbia citriodora (Corymbia citriodora subsp. variegata genotype CCV2-018) | 35628 | 33932 | 1696 | 526 | 33406 | 8336 | 269 | 674 | 52 | ||
| Arabidopsis lyrata (Arabidopsis lyrata subsp. lyrata strain MN47) | 32667 | 30553 | 2114 | 766 | 29787 | 2824 | 105 | 786 | 160 | ||
| Vigna radiata (Vigna radiata var. radiata strain VC1973A) | 22368 | 21464 | 904 | 97 | 21367 | 892 | 87 | 795 | 314 | ||
| Brassica napus (Brassica napus strain Darmor-bzh) | 101040 | 95263 | 5777 | 1698 | 93565 | 12240 | 1430 | 3868 | 433 | ||
| Olea europaea (Olea europaea subsp. europaea variety Farga) | 55576 | 50011 | 5565 | 4309 | 45702 | 13429 | 874 | 2450 | 132 | ||
| Pisum sativum (Pisum sativum cultivar Cameor) | 43691 | 36993 | 6698 | 5420 | 31573 | 9478 | 325 | 1491 | 192 | ||
| Prunus persica (Prunus persica strain Lovell) | 26873 | 25318 | 1555 | 140 | 25178 | 1140 | 70 | 418 | 73 | ||
| Arachis hypogaea (Arachis hypogaea) | 82403 | 78175 | 4228 | 13600 | 64575 | 48658 | 440 | 3109 | 283 | ||
| Cajanus cajan (pigeon pea) - GCA_000340665.1 (Cajanus cajan) | 48618 | 47198 | 1420 | 5340 | 41858 | 18351 | 396 | 1062 | 81 | ||
| Populus trichocarpa (Populus trichocarpa) | 34699 | 32588 | 2111 | 645 | 31943 | 12926 | 138 | 431 | 47 | ||
| Solanum tuberosum (Solanum tuberosum cultivar DM 1-3 516 R44) | 39021 | 35418 | 3603 | 6465 | 28953 | 9204 | 280 | 1260 | 96 | ||
| Trifolium pratense (Trifolium pratense strain Milvus B) | 39917 | 36156 | 3761 | 1383 | 34773 | 6817 | 678 | 2455 | 306 | ||
| Glycine max (Glycine max strain Williams 82) | 55897 | 51748 | 4149 | 588 | 51160 | 3494 | 207 | 1565 | 88 | ||
| Beta vulgaris (Beta vulgaris subsp. vulgaris strain KWS2320 DH) | 26521 | 20865 | 5656 | 879 | 19986 | 2574 | 57 | 414 | 78 | ||
| Arabidopsis thaliana (Arabidopsis thaliana strain Columbia) | 27628 | 26375 | 1253 | 133 | 26242 | 1048 | 29 | 283 | 58 | ||
| Solanum lycopersicum (Solanum lycopersicum strain Heinz 1706) | 34429 | 29608 | 4821 | 1217 | 28391 | 3873 | 420 | 1123 | 497 | ||
| Brassica oleracea (Brassica oleracea var. oleracea strain TO1000) | 59220 | 57448 | 1772 | 1802 | 55646 | 7385 | 607 | 2180 | 423 | ||
| Glycine soja (Wild soybean) (Glycine soja) | 47162 | 46754 | 408 | 1320 | 45434 | 3359 | 117 | 799 | 94 | ||
| Vitis vinifera (Vitis vinifera strain PN40024) | 35134 | 30753 | 4381 | 3278 | 27475 | 8546 | 380 | 977 | 89 |
Amborellales
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Amborella trichopoda (Amborella trichopoda) | 27313 | 21543 | 5770 | 3570 | 17973 | 5499 | 623 | 1157 | 58 |
Embryophyta
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Papaver somniferum (Papaver somniferum strain High Noscapine 1 (HN1)) | 41770 | 36154 | 5616 | 3924 | 32230 | 19154 | 195 | 1389 | 510 | ||
| Nymphaea colorata (Nymphaea colorata strain Beijing-Zhang1983) | 28438 | 24180 | 4258 | 4110 | 20070 | 8676 | 311 | 991 | 662 | ||
| Marchantia polymorpha (Marchantia polymorpha) | 18004 | 13371 | 4633 | 1354 | 12017 | 3571 | 14 | 149 | 306 | ||
| Physcomitrium patens (Physcomitrium patens strain Gransden 2004) | 32234 | 23342 | 8892 | 3300 | 20042 | 12087 | 42 | 478 | 602 | ||
| Selaginella moellendorffii (Selaginella moellendorffii) | 34799 | 33251 | 1548 | 6372 | 26879 | 21253 | 84 | 1773 | 282 |
Streptophyta
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chara braunii (Chara braunii strain S276) | 34718 | 30445 | 4273 | 14767 | 15678 | 22058 | 108 | 357 | 1324 |
Chlorophyta
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chlamydomonas reinhardtii (Chlamydomonas reinhardtii strain CC-503 cw92 mt+) | 17743 | 12357 | 5386 | 3613 | 8744 | 5193 | 44 | 142 | 1020 | ||
| Ostreococcus lucimarinus (Ostreococcus lucimarinus CCE9901) | 7603 | 5242 | 2361 | 371 | 4871 | 604 | 12 | 335 | 54 |
Rhodophyta
| Species | # Genes | # Genes in a tree | # Orphaned genes | # Genes in a single-species tree | # Genes in a multi-species tree | Coverage | # species-specific duplications | # Split genes | # short genes | # Long genes | Gene QC |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cyanidioschyzon merolae (Cyanidioschyzon merolae strain 10D) | 4973 | 3570 | 1403 | 133 | 3437 | 239 | 0 | 66 | 182 | ||
| Chondrus crispus (Chondrus crispus strain Stackhouse) | 9807 | 5782 | 4025 | 1425 | 4357 | 1785 | 40 | 246 | 170 | ||
| Galdieria sulphuraria (Galdieria sulphuraria strain 074W) | 6622 | 4999 | 1623 | 670 | 4329 | 962 | 14 | 138 | 136 |
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