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    Zea mays (Zm-B73-REFERENCE-NAM-5.0) ▼

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    Chromosome 2: 187,924,179-187,925,554

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    Genes

    Manually curated AGPv4 gene models with Apollo Annotation Editor

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    Sequence

    Track showing sequence in both directions. Only displayed at 1Kb and below.

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    Gramene maize AGPv4 coding genes mapped with liftoff

    This track comprises multiple analyses

    Gramene maize AGPv4 coding genes mapped with liftoff

    Gramene maize AGPv3 coding genes mapped with liftoff

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    Genes

    Manually curated AGPv4 gene models with Apollo Annotation Editor

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    Sequence

    Track showing sequence in both directions. Only displayed at 1Kb and below.

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    HC_lncRNAs

    High Confidence lncRNAs

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    Gramene maize AGPv4 coding genes mapped with liftoff

    This track comprises multiple analyses

    Gramene maize AGPv4 coding genes mapped with liftoff

    Gramene maize AGPv3 coding genes mapped with liftoff

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    Non-coding genes annotated by CSHL

    This track comprises multiple analyses

    Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.

    Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.

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    Contigs

    Track showing underlying assembly contigs.

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    Non-coding genes annotated by CSHL

    This track comprises multiple analyses

    Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.

    Gene annotations from the CSHL gene annotation pipeline developed under NAM project. It is performed through an automated, evidence-based method combining 3rd party software including Mikado, BRAKER and PASA. Further filtered by conservation and AED score, classified into coding and non-coding sets.

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    HC_lncRNAs

    High Confidence lncRNAs

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    Sequence variants (all sources)

    Sequence variants from all sources

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