Summary
Sequence
Protein Information
- Protein summary
- Domains & features
- Variants
- PDB 3D protein model
- AlphaFold predicted model
Genetic Variation
- Variant table
- Variant image
- Population comparison
- Comparison image
External References
- General identifiers
- Oligo probes
Supporting evidence
ID History
- Transcript history
- Protein history

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Transcript: AT5G28490.1 LSH1-201

Description

LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) [Source:NCBI gene (formerly Entrezgene);Acc:832941]

Location

About this transcript

This transcript has 1 exon, is annotated with 12 domains and features and is associated with 175 variant alleles.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
LSH1-201	AT5G28490.1	1294	190aa	AT5G28490.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178UNT3 Q6NNI3	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Summary

Statistics

Exons: 1, Coding exons: 1, Transcript length: 1,294 bps, Translation length: 190 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6NNI3

Version

AT5G28490.1

Type

Protein coding

Annotation Method

Gene annotation by ARAPORT through a process of automatic and manual curation.