Gene: AT5G13260

Description

myosin [Source:NCBI gene (formerly Entrezgene);Acc:831167]

Gene Synonyms

T31B5.80, T31B5_80

Location

Chromosome 5: 4,242,896-4,246,882 forward strand.

About this gene

This gene has 1 transcript (splice variant), 91 orthologues and 4 paralogues.

Transcripts

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Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT5G13260-201	AT5G13260.1	2087	537aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178UMR8 Q8VZL1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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PTV = Protein Truncating Variant
(0)

transcript ablation
(0)

splice acceptor variant
(0)

splice donor variant
(0)

stop gained
(0)

frameshift variant
(0)

stop lost
(0)

start lost
(0)

transcript amplification
(0)

inframe insertion
(0)

inframe deletion
(13)

missense variant
(0)

protein altering variant
(0)

splice donor 5th base variant
(8)

splice region variant
(0)

splice donor region variant
(0)

splice polypyrimidine tract variant
(0)

incomplete terminal codon variant
(0)

start retained variant
(1)

stop retained variant
(16)

synonymous variant
(0)

coding sequence variant
(0)

mature miRNA variant
(16)

5 prime UTR variant
(12)

3 prime UTR variant
(0)

non coding transcript exon variant
(93)

intron variant
(0)

NMD transcript variant
(0)

non coding transcript variant
(0)

coding transcript variant
(21)

upstream gene variant
(6)

downstream gene variant
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5:4237896 - 5:4251882
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(158)
SNP
(8)
deletion
(0)
genetic marker
(0)
indel
(12)
insertion
(0)
sequence alteration
(0)
substitution
(0)
tandem repeat
(0)
somatic SNV
(0)
somatic deletion
(0)
somatic genetic marker
(0)
somatic indel
(0)
somatic insertion
(0)
somatic sequence alteration
(0)
somatic substitution
(0)
somatic tandem repeat
(0)
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(178)
The 1001 Genomes Project
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1000Genomes
(0)
HapMap
(0)
Cited
(0)
ESP
(0)
ExAC
(0)
Frequency
(0)
gnomAD
(0)
Multiple_observations
(0)
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(0)
TOPMed
(178)
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uncertain significance
(0)
not provided
(0)
other
(0)
benign
(0)
likely benign
(0)
association
(0)
histocompatibility
(0)
confers sensitivity
(0)
drug response
(0)
risk factor
(0)
likely pathogenic
(0)
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(0)
pathogenic
(178)
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AT5G13260.1
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- Transcript

Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	SIFT	Transcript

ENSVATH10728730	5:4242704	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH06961881	5:4242716	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH06961882	5:4242719	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH10728731	5:4242721	T/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH06961883	5:4242732	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH03053098	5:4242734	A/C	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH06961884	5:4242738	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH10728732	5:4242739	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242742_G_A	5:4242742	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242753_A_G	5:4242753	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH10728733	5:4242760	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242770_C_T	5:4242770	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH03053099	5:4242787	C/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH00620086	5:4242823	C/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242828_G_A	5:4242828	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH00620087	5:4242832	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242845_C_CA	5: between 4242845 & 4242846	-/A	insertion	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH06961885	5:4242850	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242855_C_CAT	5: between 4242855 & 4242856	-/AT	insertion	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
tmp_5_4242882_G_A	5:4242882	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH00620088	5:4242894	C/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT5G13260.1
ENSVATH10728734	5:4242927	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH10728765	5:4242944	G/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4242967_A_AG	5: between 4242967 & 4242968	-/G	insertion	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4242977_A_T	5:4242977	A/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH10728766	5:4242982	G/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961886	5:4243004	A/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH00620089	5:4243042	C/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961887	5:4243064	C/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH10728767	5:4243065	A/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4243070_A_G	5:4243070	A/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961888	5:4243072	A/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4243074_C_A	5:4243074	C/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961889	5:4243078	C/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH10728768	5:4243079	A/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4243160_T_C	5:4243160	T/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH14015586	5:4243162	C/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH10728769	5:4243205	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	Q	14	-	AT5G13260.1
tmp_5_4243229_C_A	5:4243229	C/A	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	T	22	-	AT5G13260.1
ENSVATH03053100	5:4243259	G/T	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	P	32	-	AT5G13260.1
ENSVATH10728770	5:4243364	C/G	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	67	-	AT5G13260.1
ENSVATH10728771	5:4243378	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	T/I	72	0.09	AT5G13260.1
ENSVATH06961890	5:4243419	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	G/S	86	0.75	AT5G13260.1
tmp_5_4243526_T_C	5:4243526	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	121	-	AT5G13260.1
tmp_5_4243560_C_A	5:4243560	C/A	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/T	133	0.09	AT5G13260.1
tmp_5_4243579_C_T	5:4243579	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961891	5:4243593	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620090	5:4243598	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4243605_C_A	5:4243605	C/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH04410809	5:4243666	T/-	deletion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961892	5:4243737	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620091	5:4243740	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH14015587	5:4243759	G/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4243804_T_C	5:4243804	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	141	-	AT5G13260.1
ENSVATH14015588	5:4243811	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/T	144	0.78	AT5G13260.1
ENSVATH06961893	5:4243813	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	144	-	AT5G13260.1
tmp_5_4243815_A_C	5:4243815	A/C	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	Q/P	145	0.31	AT5G13260.1
tmp_5_4243818_C_T	5:4243818	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	P/L	146	0.04	AT5G13260.1
tmp_5_4243858_T_A	5:4243858	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	N/K	159	0.93	AT5G13260.1
tmp_5_4243870_T_C	5:4243870	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	V	163	-	AT5G13260.1
ENSVATH06961894	5:4243908	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4243918_T_G	5:4243918	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4243935_A_G	5:4243935	A/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244071_G_GT	5: between 4244071 & 4244072	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH03053101	5:4244081	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244124_C_T	5:4244124	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961895	5:4244174	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/G	206	0.04	AT5G13260.1
tmp_5_4244175_G_T	5:4244175	G/T	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	S/I	206	0.21	AT5G13260.1
ENSVATH10728772	5:4244176	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	206	-	AT5G13260.1
tmp_5_4244250_C_CT	5: between 4244250 & 4244251	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728773	5:4244343	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244364_C_CT	5: between 4244364 & 4244365	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH03053102	5:4244366	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244372_T_G	5:4244372	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244377_T_A	5:4244377	T/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH15372558	5:4244393-4244394	GA/-	deletion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620092	5:4244396	A/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728774	5:4244473	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244486_G_A	5:4244486	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH04410810	5: between 4244492 & 4244493	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961896	5:4244743	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	A/V	276	0.02	AT5G13260.1
ENSVATH04410811	5: between 4244770 & 4244771	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH03053103	5:4244810	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961897	5:4244812	T/C/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961897	5:4244812	T/C/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244834_A_C	5:4244834	A/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728806	5:4244836	A/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244843_A_T	5:4244843	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244858_T_C	5:4244858	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4244985_G_GT	5: between 4244985 & 4244986	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245030_C_A	5:4245030	C/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH14015589	5:4245168	G/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245176_G_A	5:4245176	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728807	5:4245213	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	I	341	-	AT5G13260.1
ENSVATH10728808	5:4245222	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	D	344	-	AT5G13260.1
tmp_5_4245273_T_C	5:4245273	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	F	361	-	AT5G13260.1
tmp_5_4245288_A_G	5:4245288	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	S	366	-	AT5G13260.1
ENSVATH06961898	5:4245357	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245368_A_T	5:4245368	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245375_TA_T	5:4245376	A/-	deletion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728809	5:4245384	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961899	5:4245391	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620093	5:4245426	A/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245446_G_A	5:4245446	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	E/K	381	0.14	AT5G13260.1
tmp_5_4245523_C_T	5:4245523	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	406	-	AT5G13260.1
ENSVATH06961900	5:4245601	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961901	5:4245626	C/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961902	5:4245627	T/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245715_GCTTCTTCT_G	5:4245716-4245723	CTTCTTCT/-	deletion	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245723_T_G	5:4245723	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245734_A_T	5:4245734	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245735_A_G	5:4245735	A/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245742_GT_G	5:4245743	T/-	deletion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728810	5:4245744	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH14015590	5:4245749	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245760_G_A	5:4245760	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620094	5:4245792	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961903	5:4245807	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245815_A_T	5:4245815	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728812	5:4245832	T/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728813	5:4245844	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245845_C_T	5:4245845	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620095	5:4245857	G/T/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620095	5:4245857	G/T/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245871_G_C	5:4245871	G/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245880_G_GT	5: between 4245880 & 4245881	-/T	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4245890_G_C	5:4245890	G/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961904	5:4245924	G/T	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	G/V	449	0.01	AT5G13260.1
ENSVATH03053104	5:4245954	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728814	5:4245955	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728815	5:4245963	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728816	5:4245978	T/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH14015591	5:4245982	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620096	5:4245996	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961905	5:4246005	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246016_G_A	5:4246016	G/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246031_C_A	5:4246031	C/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246047_C_A	5:4246047	C/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246063_T_TA	5: between 4246063 & 4246064	-/A	insertion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246079_C_A	5:4246079	C/A	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728817	5:4246096	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH15372559	5:4246136-4246137	TT/-	deletion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH14900268	5:4246137	T/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728818	5:4246138	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961906	5:4246210	A/C	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246211_G_A	5:4246211	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961907	5:4246217	C/G	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH03053105	5:4246218	A/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246251_C_T	5:4246251	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246261_T_C	5:4246261	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246270_CA_C	5:4246271	A/-	deletion	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961908	5:4246337	C/T	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
tmp_5_4246390_G_C	5:4246390	G/C	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH00620097	5:4246426	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	Q	481	-	AT5G13260.1
ENSVATH06961909	5:4246525	A/C	SNP	The 1001 Genomes Project	-	-	A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intronsplice region variant A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH06961910	5:4246579	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH03053106	5:4246589	T/C	SNP	The 1001 Genomes Project	-	-	A transcript variant occurring within an intronintron variant	-	-	-	AT5G13260.1
ENSVATH10728822	5:4246625	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant, that changes one or more bases, resulting in a different amino acid sequence but where the length is preservedmissense variant	R/K	521	0.15	AT5G13260.1
ENSVATH03053107	5:4246650	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant where there is no resulting change to the encoded amino acidsynonymous variant	L	529	-	AT5G13260.1
ENSVATH10728823	5:4246676	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant where at least one base in the terminator codon is changed, but the terminator remainsstop retained variant	*	538	-	AT5G13260.1
tmp_5_4246688_T_A	5:4246688	T/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH14015592	5:4246698	G/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4246707_G_A	5:4246707	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH00620098	5:4246753	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961911	5:4246764	G/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961912	5:4246768	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961913	5:4246778	C/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH06961914	5:4246788	A/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4246789_G_GA	5: between 4246789 & 4246790	-/A	insertion	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4246813_C_A	5:4246813	C/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4246822_T_G	5:4246822	T/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
ENSVATH14900269	5:4246862	T/-	deletion	The 1001 Genomes Project	-	-	A UTR variant of the 3' UTR3 prime UTR variant	-	-	-	AT5G13260.1
tmp_5_4246906_T_G	5:4246906	T/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	AT5G13260.1
tmp_5_4246933_A_G	5:4246933	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	AT5G13260.1
tmp_5_4246940_C_T	5:4246940	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	AT5G13260.1
tmp_5_4246984_C_G	5:4246984	C/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	AT5G13260.1
ENSVATH06961915	5:4247022	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	AT5G13260.1
ENSVATH00620099	5:4247058	C/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 3' of a genedownstream gene variant	-	-	-	AT5G13260.1

Gene: AT5G13260

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Variant table

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Gene: AT5G13260

Variant table

Variant table

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