Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
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- Structural variants
Gene expression
Pathway
Molecular interactions
External references
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ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: DME AT5G04560

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Description

HhH-GPD base excision DNA repair family protein [Source:NCBI gene (formerly Entrezgene);Acc:830335]

Gene Synonyms

AT5G04570, AT5G04580, DEMETER, T32M21.160, T32M21_160

Location

Chromosome 5: 1,309,099-1,318,520 forward strand.

About this gene

This gene has 3 transcripts (splice variants), 237 orthologues and 7 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
DME-202	AT5G04560.2	6681	1987aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8LK56	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
DME-203	AT5G04560.1	6963	1729aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
DME-201	AT5G04560.3	6687	1729aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-

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Variant table

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Variant table

This table shows known variants for this gene. Use the 'Consequence Type' filter to view a subset of these.

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Variant ID	Chr: bp	Alleles	Class	Source	Evidence	Clin. Sig.	Conseq. Type	AA	AA coord	SIFT	Transcript

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