Gene: AT3G52950

Description

CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:824461]

Location

Chromosome 3: 19,634,331-19,636,845 forward strand.

About this gene

This gene has 2 transcripts (splice variants), 273 orthologues and 9 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT3G52950-201	AT3G52950.1	2292	556aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VLH8 Q9LF97	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT3G52950-202	AT3G52950.2	2112	556aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VLH8 Q9LF97	-	-

ENSVATH12734892	3:19634137	C/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH12734893	3:19634156	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497261	3:19634167	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH12734894	3:19634168	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634169_T_A	3:19634169	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634170_T_A	3:19634170	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634175_T_G	3:19634175	T/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH06304776	3:19634181	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634184_A_T	3:19634184	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634223_TA_T	3:19634224	A/-	deletion	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634228_G_T	3:19634228	G/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497262	3:19634229	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH06304777	3:19634230	A/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634232_T_C	3:19634232	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH12734905	3:19634235	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497263	3:19634236	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH06304778	3:19634237	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH06304779	3:19634238	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497264	3:19634239	A/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497265	3:19634240	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH06304781	3:19634249	T/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH06304782	3:19634256	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634258_C_T	3:19634258	C/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH00416639	3:19634261	T/G	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497266	3:19634283	G/T	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634292_T_C	3:19634292	T/C	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH02497267	3:19634304	G/A	SNP	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
tmp_3_19634307_T_TA	3: between 19634307 & 19634308	-/A	insertion	The 1001 Genomes Project	-	-	A sequence variant located 5' of a geneupstream gene variant	-	-	-	AT3G52950.1
ENSVATH15364864	3:19634341-19634342	AA/A/-/AAA	sequence alteration	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH15364864	3:19634341-19634342	AA/A/-/AAA	sequence alteration	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH15364864	3:19634341-19634342	AA/A/-/AAA	sequence alteration	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH15192536	3:19634342	A/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH04250305	3: between 19634343 & 19634344	-/G	insertion	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
tmp_3_19634345_A_G	3:19634345	A/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH06304783	3:19634360	G/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH02497268	3:19634392	T/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH02497269	3:19634417	C/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
tmp_3_19634433_G_C	3:19634433	G/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH12734906	3:19634440	A/C	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
tmp_3_19634445_CCA_C	3:19634446-19634447	CA/-	deletion	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH12734907	3:19634455	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH00416640	3:19634462	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH15192537	3:19634474	G/-	deletion	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH14426926	3:19634489	G/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH02497270	3:19634497	T/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH06304784	3:19634502	T/A	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH04250306	3:19634518	T/-	deletion	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
ENSVATH00416641	3:19634530	A/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
tmp_3_19634531_A_G	3:19634531	A/G	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1
tmp_3_19634540_G_T	3:19634540	G/T	SNP	The 1001 Genomes Project	-	-	A UTR variant of the 5' UTR5 prime UTR variant	-	-	-	AT3G52950.1

Variant table

Variant table

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Gene: AT3G52950

Variant table

Variant table

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