Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT4G39420

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Description

spatacsin carboxy-terminus protein [Source:NCBI gene (formerly Entrezgene);Acc:830097]

Gene Synonyms

F23K16.50, F23K16_50

Location

Chromosome 4: 18,339,127-18,355,149 forward strand.

About this gene

This gene has 4 transcripts (splice variants) and 98 orthologues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	UniProt	RefSeq	Flags
AT4G39420-201	AT4G39420.2	10405	3184aa	AT4G39420.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JW20	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT4G39420-202	AT4G39420.3	10197	2397aa	AT4G39420.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B3P8	-	-
AT4G39420-204	AT4G39420.4	10054	3181aa	AT4G39420.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1P8B3N6	-	-
AT4G39420-203	AT4G39420.1	8199	2513aa	AT4G39420.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JW21	-	-

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Summary

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