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    Gene: AT4G13210

    Description

    Pectin lyase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826936]

    Gene Synonyms

    F17N18.100, F17N18_100

    Location

    Chromosome 4: 7,669,948-7,673,376 forward strand.

    About this gene

    This gene has 2 transcripts (splice variants), 187 orthologues and 25 paralogues.

    Transcripts

    Show transcript tableHide transcript table

    Show/hide columns (1 hidden)
    • Name
    • Transcript ID
    • bp
    • Protein
    • Translation ID
    • Biotype
    • UniProt
    • RefSeq
    • Flags
    Download what you seeDownload whole table
    NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
    AT4G13210-201AT4G13210.21650438aa
     
    Protein coding
    		A0A178V021 Q9SVQ6 -Ensembl Canonical
    AT4G13210-202AT4G13210.11309401aa
     
    Protein coding
    		F4JSA1 --

    Gene gain/loss tree

    Info

    This gene family has significant gene gain or loss events (p-value for the gene family is 0, as computed by CAFE). Click the tree nodes or the icons on the image blue bar to interact with the tree.

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    000Chondrus crispus00Galdieria sulphuraria0Cyanidioschyzon merolae000Chlamydomonas reinhardtii0Ostreococcus lucimarinus000Marchantia polymorpha0Physcomitrium patens105Amborella trichopoda7Nymphaea colorata010Papaver somniferum6Asparagus officinalis000006Eragrostis curvula9Eragrostis tef0003Setaria italica3Setaria viridis11Echinochloa crus-galli6Digitaria exilis3Panicum hallii HAL203Sorghum bicolor3Zea mays01Saccharum spontaneum (component A)1Saccharum spontaneum (component D)1Saccharum spontaneum (component C)1Saccharum spontaneum (component B)002Brachypodium distachyon004Avena sativa Sang (component D)0Avena sativa Sang (component U)4Avena sativa Sang (component A)4Avena sativa OT30981Avena sativa Sang (component C)4Lolium perenne003Secale cereale3Hordeum vulgare02Aegilops umbellulata00Triticum aestivum (component U)0Triticum turgidum (component U)03Triticum aestivum (component B)2Triticum turgidum (component B)6Triticum timopheevii (component B)3Triticum spelta (component B)3Triticum dicoccoides (component B)03Triticum aestivum (component A)3Triticum turgidum (component A)2Triticum timopheevii (component A)3Triticum urartu2Triticum spelta (component A)2Triticum dicoccoides (component A)3Triticum aestivum (component D)4Triticum spelta (component D)2Aegilops tauschii003Oryza longistaminata3Oryza rufipogon05Oryza sativa Indica Group3Oryza sativa Japonica Group3Oryza brachyantha3Oryza nivara3Oryza punctata3Oryza glaberrima3Oryza glumipatula2Oryza meridionalis3Oryza barthii3Leersia perrieri6Ananas comosus11Musa acuminata9Dioscorea rotundata013Kalanchoe fedtschenkoi00026Helianthus annuus13Lactuca sativa13Cynara cardunculus19Daucus carota00012Capsicum annuum010Solanum lycopersicum11Solanum tuberosum11Nicotiana attenuata14Ipomoea triloba011Sesamum indicum020Fraxinus excelsior23Olea europaea8Coffea canephora19Actinidia chinensis09Vitis vinifera0009Quercus suber11Quercus lobata7Corylus avellana15Juglans regia015Populus trichocarpa15Manihot esculenta07Cannabis sativa female9Ficus carica09Rosa chinensis013Malus domestica Golden09Prunus dulcis9Prunus persica11Prunus avium09Citrullus lanatus09Cucumis melo9Cucumis sativus024Arachis hypogaea17Lupinus angustifolius0010Cajanus cajan (pigeon pea) - GCA_000340665.110Phaseolus vulgaris010Vigna angularis9Vigna radiata10Vigna unguiculata10Lablab purpureus Natoba9Sphenostylis stenocarpa021Glycine max17Glycine soja (Wild soybean)0011Medicago truncatula10Trifolium pratense011Lathyrus sativus010Pisum sativum Garden pea10Pisum sativum10Pisum sativum JI282210Vicia faba008Theobroma cacao Matina 1-618Gossypium raimondii7Corchorus capsularis0023Brassica juncea58Brassica napus37Brassica oleracea32Brassica rapa R-o-1813Arabis alpina2Eutrema salsugineum0015Arabidopsis thaliana15Arabidopsis halleri15Arabidopsis lyrata017Camelina sativa (component G2)17Camelina sativa (component G3)17Camelina sativa (component G1)09Pistacia vera8Citrus clementina011Eucalyptus grandis15Corymbia citriodora08Beta vulgaris11Chenopodium quinoa2Selaginella moellendorffii0Chara braunii0000Human0C.savignyi00Caenorhabditis elegans (Nematode, N2)0Drosophila melanogaster - (Fruit fly)0Saccharomyces cerevisiae
    LEGENDNo significant changeSignificant ExpansionSignificant ContractionNNumber of MembersNodes with 0 membersNumber of members158SpeciesSpecies with no genesSpeciesQueried species

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