Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT4G13210

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Description

Pectin lyase-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:826936]

Gene Synonyms

F17N18.100, F17N18_100

Location

Chromosome 4: 7,669,948-7,673,376 forward strand.

About this gene

This gene has 2 transcripts (splice variants), 187 orthologues and 25 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT4G13210-201	AT4G13210.2	1650	438aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V021 Q9SVQ6	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
AT4G13210-202	AT4G13210.1	1309	401aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JSA1	-	-

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Literature

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Showing the top 9 hits from Europe PubMed Central

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PubMed ID	Title	Authors	Journal
39409177	Modulation of the Arabidopsis Starch Metabolic Network by the Cytosolic Acetyl-CoA Pathway in the Context of the Diurnal Illumination Cycle.	Wang L, Foster CM, Mentzen WI, Tanvir R, Meng Y, Nikolau BJ, Wurtele ES, Li L.	Int J Mol Sci 25 (19) 2024
25382143	Genome-wide association study of Arabidopsis thaliana leaf microbial community.	Horton MW, Bodenhausen N, Beilsmith K, Meng D, Muegge BD, Subramanian S, Vetter MM, Vilhjálmsson BJ, Nordborg M, Gordon JI, Bergelson J.	Nat Commun 5 2014
34579478	Combined Abiotic Stresses Repress Defense and Cell Wall Metabolic Genes and Render Plants More Susceptible to Pathogen Infection.	Sewelam N, El-Shetehy M, Mauch F, Maurino VG.	Plants (Basel) 10 (9) 2021
21821598	Global gene expression analysis of transgenic, mannitol-producing, and salt-tolerant Arabidopsis thaliana indicates widespread changes in abiotic and biotic stress-related genes.	Chan Z, Grumet R, Loescher W.	J Exp Bot 62 (14) 2011
19704843	Cell wall remodeling in Arabidopsis stamen abscission zones: Temporal aspects of control inferred from transcriptional profiling.	Lashbrook CC, Cai S.	Plant Signal Behav 3 (9) 2008
24919580	A pollen-specific calmodulin-binding protein, NPG1, interacts with putative pectate lyases.	Shin SB, Golovkin M, Reddy AS.	Sci Rep 4 2014
24821950	TOPOISOMERASE 6B is involved in chromatin remodelling associated with control of carbon partitioning into secondary metabolites and cell walls, and epidermal morphogenesis in Arabidopsis.	Mittal A, Balasubramanian R, Cao J, Singh P, Subramanian S, Hicks G, Nothnagel EA, Abidi N, Janda J, Galbraith DW, Rock CD.	J Exp Bot 65 (15) 2014
21637781	SHINE transcription factors act redundantly to pattern the archetypal surface of Arabidopsis flower organs.	Shi JX, Malitsky S, De Oliveira S, Branigan C, Franke RB, Schreiber L, Aharoni A.	PLoS Genet 7 (5) 2011
19956801	AGAMOUS controls GIANT KILLER, a multifunctional chromatin modifier in reproductive organ patterning and differentiation.	Ng KH, Yu H, Ito T.	PLoS Biol 7 (11) 2009

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