Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT2G40650

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Description

PRP38 family protein [Source:NCBI gene (formerly Entrezgene);Acc:818660]

Gene Synonyms

T7D17.17, T7D17_17

Location

Chromosome 2: 16,963,286-16,965,798 reverse strand.

About this gene

This gene has 1 transcript (splice variant), 164 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT2G40650-201	AT2G40650.1	1572	355aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178VVG9 Q8LB54	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Literature

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Showing the top 4 hits from Europe PubMed Central

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PubMed ID	Title	Authors	Journal
PPR548323	The genetic architecture ofArabidopsis thalianain response to native non-pathogenic leaf bacterial species revealed by GWA mapping in field conditions	Ramírez-Sánchez D, Duflos R, Gibelin-Viala C, Zamar R, Vailleau F, Roux F.	preprint (2022)
29487188	A Genetic Screen Identifies PRP18a, a Putative Second Step Splicing Factor Important for Alternative Splicing and a Normal Phenotype in Arabidopsis thaliana.	Kanno T, Lin WD, Chang CL, Matzke M, Matzke AJM.	G3 (Bethesda) 8 (4) 2018
23073011	Genome wide analysis of Cyclophilin gene family from rice and Arabidopsis and its comparison with yeast.	Trivedi DK, Yadav S, Vaid N, Tuteja N.	Plant Signal Behav 7 (12) 2012
20941385	Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis.	Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD.	PLoS Genet 6 (9) 2010

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