Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: AT1G28240

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Description

strawberry notch protein (DUF616) [Source:NCBI gene (formerly Entrezgene);Acc:839718]

Gene Synonyms

F3H9.11, F3H9_11

Location

Chromosome 1: 9,868,257-9,872,278 reverse strand.

About this gene

This gene has 1 transcript (splice variant), 266 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
AT1G28240-201	AT1G28240.1	2490	581aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A7G2DW92 Q9FZ97	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Literature

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Showing the top 7 hits from Europe PubMed Central

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PubMed ID	Title	Authors	Journal
36357524	Polymerization of the backbone of the pectic polysaccharide rhamnogalacturonan I.	Amos RA, Atmodjo MA, Huang C, Gao Z, Venkat A, Taujale R, Kannan N, Moremen KW, Mohnen D.	Nat Plants 8 (11) 2022
39758276	Mucilicious methods: Navigating the tools developed to Arabidopsis Seed Coat Mucilage analysis.	Saez-Aguayo S, Sanhueza D, Jara V, Galleguillos B, de la Rubia AG, Largo-Gosens A, Moreno A.	Cell Surf 13 2025
39859452	A Fresh Look at Celery Collenchyma and Parenchyma Cell Walls Through a Combination of Biochemical, Histochemical, and Transcriptomic Analyses.	Mokshina N, Sautkina O, Gorshkov O, Mikshina P.	Int J Mol Sci 26 (2) 2025
39441672	Daily glycome and transcriptome profiling reveals polysaccharide structures and correlated glycosyltransferases critical for cotton fiber growth.	Swaminathan S, Grover CE, Mugisha AS, Sichterman LE, Lee Y, Yang P, Mallery EL, Jareczek JJ, Leach AG, Xie J, Wendel JF, Szymanski DB, Zabotina OA.	Plant J 120 (5) 2024
30228108	Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage.	Voiniciuc C, Engle KA, Günl M, Dieluweit S, Schmidt MH, Yang JY, Moremen KW, Mohnen D, Usadel B.	Plant Physiol 178 (3) 2018
26172569	A Genome Scan for Genes Underlying Microgeographic-Scale Local Adaptation in a Wild Arabidopsis Species.	Kubota S, Iwasaki T, Hanada K, Nagano AJ, Fujiyama A, Toyoda A, Sugano S, Suzuki Y, Hikosaka K, Ito M, Morinaga S.	PLoS Genet 11 (7) 2015
21431780	Characterization of the plasma membrane proteins and receptor-like kinases associated with secondary vascular differentiation in poplar.	Song D, Xi W, Shen J, Bi T, Li L.	Plant Mol Biol 76 (1-2) 2011

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