Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Gene families
Literature
Plant Compara
Pan-taxonomic Compara
- Gene Tree
- Orthologues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Ensembl Plants is produced in collaboration with Gramene

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Gene: SPHK1 AT4G21540

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Description

sphingosine kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:828239]

Gene Synonyms

F18E5.160, F18E5_160, sphingosine kinase 1

Location

Chromosome 4: 11,459,228-11,462,651 forward strand.

About this gene

This gene has 3 transcripts (splice variants), 234 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	UniProt	RefSeq	Flags
SPHK1-202	AT4G21540.1	2134	485aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A178V174 Q8L7L1	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
SPHK1-201	AT4G21540.3	2097	385aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-	-
SPHK1-203	AT4G21540.2	1767	275aa	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F4JJK1	-	-

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Gene expression

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Personal Data