Arabidopsis thaliana (TAIR10)
Description

RING/FYVE/PHD zinc finger superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838082]

Location
About this gene

This gene has 1 transcript (splice variant), 3 orthologues and 25 paralogues.

Show/hide columns (1 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • RefSeq
  • Flags
NameTranscript IDbpProteinBiotypeUniProtRefSeqFlags
AT1G15165-201AT1G15165.11036329aa
 
Protein coding
F4HZI0 -Ensembl Canonical

Summary of orthologues of this gene Hide

Click on 'Show details' to display the orthologues for one or more groups of species. Alternatively, click on 'Configure this page' to choose a custom list of species.

Species setShow detailsWith 1:1 orthologuesWith 1:many orthologuesWith many:many orthologuesWithout orthologues
All (120 species)
011118
Amborellales (1 species)
0001
Chlorophyta (2 species)
0002
Embryophyta (5 species)
0113
Liliopsida (40 species)
00040
Rhodophyta (3 species)
0003
Streptophyta (1 species)
0001
Eudicotyledons (68 species)
00068

Selected orthologues Hide

Show/hide columns
  • Species
  • Type
  • Orthologue
  • Target %id
  • Query %id
  • GOC Score
  • WGA Coverage
  • High Confidence
SpeciesTypeOrthologueTarget %idQuery %idGOC ScoreWGA CoverageHigh Confidence
Marchantia polymorpha1-to-many

View Gene Tree

Mp5g16810

Compare Regions (5:20,816,811-20,824,144:1)

View Sequence Alignments

8.87 %24.01 %n/a0.00No
Physcomitrium patensMany-to-many

View Gene Tree

Pp3c14_10350

Compare Regions (14:6,556,620-6,563,600:1)

View Sequence Alignments

8.88 %24.01 %n/a0.00No
Physcomitrium patensMany-to-many

View Gene Tree

Pp3c17_14150

Compare Regions (17:9,818,864-9,825,887:-1)

View Sequence Alignments

8.55 %24.32 %n/a30.09No

Species without orthologues

118 species and cultivars are not shown in the table above because they don't have any orthologue with AT1G15165.

  • Actinidia chinensis
  • Aegilops tauschii
  • Aegilops umbellulata
  • Amborella trichopoda
  • Ananas comosus
  • Arabidopsis halleri
  • Arabidopsis lyrata
  • Arabis alpina
  • Arachis hypogaea
  • Asparagus officinalis
  • Avena sativa OT3098
  • Avena sativa Sang
  • Beta vulgaris
  • Brachypodium distachyon
  • Brassica juncea
  • Brassica napus
  • Brassica oleracea
  • Brassica rapa R-o-18
  • Cajanus cajan (pigeon pea) - GCA_000340665.1
  • Camelina sativa
  • Cannabis sativa female
  • Capsicum annuum
  • Chara braunii
  • Chenopodium quinoa
  • Chlamydomonas reinhardtii
  • Chondrus crispus
  • Citrullus lanatus
  • Citrus clementina
  • Coffea canephora
  • Corchorus capsularis
  • Corylus avellana
  • Corymbia citriodora
  • Cucumis melo
  • Cucumis sativus
  • Cyanidioschyzon merolae
  • Cynara cardunculus
  • Daucus carota
  • Digitaria exilis
  • Dioscorea rotundata
  • Echinochloa crus-galli
  • Eragrostis curvula
  • Eragrostis tef
  • Eucalyptus grandis
  • Eutrema salsugineum
  • Ficus carica
  • Fraxinus excelsior
  • Galdieria sulphuraria
  • Glycine max
  • Glycine soja (Wild soybean)
  • Gossypium raimondii
  • Helianthus annuus
  • Hordeum vulgare
  • Ipomoea triloba
  • Juglans regia
  • Kalanchoe fedtschenkoi
  • Lablab purpureus Natoba
  • Lactuca sativa
  • Lathyrus sativus
  • Leersia perrieri
  • Lolium perenne
  • Lupinus angustifolius
  • Malus domestica Golden
  • Manihot esculenta
  • Medicago truncatula
  • Musa acuminata
  • Nicotiana attenuata
  • Nymphaea colorata
  • Olea europaea
  • Oryza barthii
  • Oryza brachyantha
  • Oryza glaberrima
  • Oryza glumipatula
  • Oryza longistaminata
  • Oryza meridionalis
  • Oryza nivara
  • Oryza punctata
  • Oryza rufipogon
  • Oryza sativa Indica Group
  • Oryza sativa Japonica Group
  • Ostreococcus lucimarinus
  • Panicum hallii HAL2
  • Papaver somniferum
  • Phaseolus vulgaris
  • Pistacia vera
  • Pisum sativum
  • Pisum sativum Garden pea
  • Pisum sativum JI2822
  • Populus trichocarpa
  • Prunus avium
  • Prunus dulcis
  • Prunus persica
  • Quercus lobata
  • Quercus suber
  • Rosa chinensis
  • Saccharum spontaneum
  • Secale cereale
  • Selaginella moellendorffii
  • Sesamum indicum
  • Setaria italica
  • Setaria viridis
  • Solanum lycopersicum
  • Solanum tuberosum
  • Sorghum bicolor
  • Sphenostylis stenocarpa
  • Theobroma cacao Matina 1-6
  • Trifolium pratense
  • Triticum aestivum
  • Triticum dicoccoides
  • Triticum spelta
  • Triticum timopheevii
  • Triticum turgidum
  • Triticum urartu
  • Vicia faba
  • Vigna angularis
  • Vigna radiata
  • Vigna unguiculata
  • Vitis vinifera
  • Zea mays