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Triticum aestivum vs Triticum timopheevii Synteny results

The syntenic regions between Triticum aestivum (Triticum aestivum, IWGSC) and Triticum timopheevii (Triticum timopheevii, WRC_timopheevii_genome_with_organelles) were extracted from their pairwise alignment in Ensembl Plants release 113. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,129 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum aestivum

Uncovered: 6,689,927,947 out of 14,547,261,565
Covered: 7,857,333,618 out of 14,547,261,565

Uncovered: 64,594,379 out of 133,674,966
Covered: 69,080,587 out of 133,674,966
Triticum timopheevii

Uncovered: 2,086,221,962 out of 9,351,419,471
Covered: 7,265,197,509 out of 9,351,419,471

Uncovered: 44,078,278 out of 175,451,481
Covered: 131,373,203 out of 175,451,481