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Triticum aestivum vs Triticum aestivum Kariega Synteny results

The syntenic regions between Triticum aestivum (Triticum aestivum, IWGSC) and Triticum aestivum Kariega (Triticum aestivum, Tae_Kariega_v1) were extracted from their pairwise alignment in Ensembl Plants release 113. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 535 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum aestivum

Uncovered: 649,641,935 out of 14,547,261,565
Covered: 13,897,619,630 out of 14,547,261,565

Uncovered: 4,461,860 out of 133,674,966
Covered: 129,213,106 out of 133,674,966
Triticum aestivum Kariega

Uncovered: 563,483,047 out of 14,677,204,660
Covered: 14,113,721,613 out of 14,677,204,660

Uncovered: 8,626,837 out of 169,895,682
Covered: 161,268,845 out of 169,895,682