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Triticum aestivum vs Triticum aestivum Sy Mattis Synteny results

The syntenic regions between Triticum aestivum (Triticum aestivum, IWGSC) and Triticum aestivum Sy Mattis (Triticum aestivum, PGSBv2.1) were extracted from their pairwise alignment in Ensembl Plants release 113. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 559 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum aestivum

Uncovered: 682,458,723 out of 14,547,261,565
Covered: 13,864,802,842 out of 14,547,261,565

Uncovered: 4,693,955 out of 133,674,966
Covered: 128,981,011 out of 133,674,966
Triticum aestivum Sy Mattis

Uncovered: 1,102,130,714 out of 14,884,612,126
Covered: 13,782,481,412 out of 14,884,612,126

Uncovered: 3,559,978 out of 175,482,126
Covered: 171,922,148 out of 175,482,126