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Triticum aestivum vs Triticum aestivum Renan Synteny results

The syntenic regions between Triticum aestivum (Triticum aestivum, IWGSC) and Triticum aestivum Renan (Triticum aestivum, Triticum_aestivum_Renan_v2.1) were extracted from their pairwise alignment in Ensembl Plants release 113. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 555 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum aestivum

Uncovered: 655,281,134 out of 14,547,261,565
Covered: 13,891,980,431 out of 14,547,261,565

Uncovered: 4,915,370 out of 133,674,966
Covered: 128,759,596 out of 133,674,966
Triticum aestivum Renan

Uncovered: 217,680,020 out of 14,195,643,615
Covered: 13,977,963,595 out of 14,195,643,615

Uncovered: 1,555,144 out of 120,403,789
Covered: 118,848,645 out of 120,403,789