In this section

Medicago truncatula vs Cajanus cajan (pigeon pea) - GCA_000340665.1 Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Cajanus cajan (pigeon pea) - GCA_000340665.1 (Cajanus cajan, C.cajan_V1.0) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 62 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 405,257,654 out of 429,196,467
Covered: 23,938,813 out of 429,196,467

Uncovered: 42,069,327 out of 45,081,035
Covered: 3,011,708 out of 45,081,035
Cajanus cajan (pigeon pea) - GCA_000340665.1

Uncovered: 564,265,198 out of 592,816,859
Covered: 28,551,661 out of 592,816,859

Uncovered: 43,395,554 out of 46,457,444
Covered: 3,061,890 out of 46,457,444