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Medicago truncatula vs Vigna unguiculata Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Vigna unguiculata (Vigna unguiculata, ASM411807v1) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 60 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 248,065,142 out of 429,196,467
Covered: 181,131,325 out of 429,196,467

Uncovered: 22,272,947 out of 45,081,035
Covered: 22,808,088 out of 45,081,035
Vigna unguiculata

Uncovered: 344,352,993 out of 519,066,764
Covered: 174,713,771 out of 519,066,764

Uncovered: 18,296,415 out of 38,844,626
Covered: 20,548,211 out of 38,844,626