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Medicago truncatula vs Corylus avellana Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Corylus avellana (Corylus avellana, CavTom2PMs-1.0) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 89 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 388,277,298 out of 429,196,467
Covered: 40,919,169 out of 429,196,467

Uncovered: 39,882,266 out of 45,081,035
Covered: 5,198,769 out of 45,081,035
Corylus avellana

Uncovered: 323,568,642 out of 369,779,143
Covered: 46,210,501 out of 369,779,143

Uncovered: 25,400,766 out of 31,083,732
Covered: 5,682,966 out of 31,083,732