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Medicago truncatula vs Ficus carica Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Ficus carica (Ficus carica, UNIPI_FiCari_1.0) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 96 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 390,696,707 out of 429,196,467
Covered: 38,499,760 out of 429,196,467

Uncovered: 39,861,357 out of 45,081,035
Covered: 5,219,678 out of 45,081,035
Ficus carica

Uncovered: 294,556,701 out of 333,439,967
Covered: 38,883,266 out of 333,439,967

Uncovered: 29,619,584 out of 35,811,513
Covered: 6,191,929 out of 35,811,513