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Medicago truncatula vs Vigna radiata Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Vigna radiata (Vigna radiata var. radiata, Vradiata_ver6) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 55 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 386,259,780 out of 429,196,467
Covered: 42,936,687 out of 429,196,467

Uncovered: 39,685,581 out of 45,081,035
Covered: 5,395,454 out of 45,081,035
Vigna radiata

Uncovered: 419,889,471 out of 463,085,359
Covered: 43,195,888 out of 463,085,359

Uncovered: 24,444,153 out of 28,307,530
Covered: 3,863,377 out of 28,307,530