In this section

Medicago truncatula vs Prunus persica Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Prunus persica (Prunus persica, Prunus_persica_NCBIv2) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 88 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 364,270,495 out of 429,196,467
Covered: 64,925,972 out of 429,196,467

Uncovered: 36,514,878 out of 45,081,035
Covered: 8,566,157 out of 45,081,035
Prunus persica

Uncovered: 170,787,881 out of 227,411,381
Covered: 56,623,500 out of 227,411,381

Uncovered: 21,872,637 out of 33,236,255
Covered: 11,363,618 out of 33,236,255