In this section

Medicago truncatula vs Phaseolus vulgaris Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MtrunA17r5.0_ANR) and Phaseolus vulgaris (Phaseolus vulgaris, PhaVulg1_0) were extracted from their pairwise alignment in Ensembl Plants release 112. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 79 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 244,748,179 out of 429,196,467
Covered: 184,448,288 out of 429,196,467

Uncovered: 21,890,025 out of 45,081,035
Covered: 23,191,010 out of 45,081,035
Phaseolus vulgaris

Uncovered: 337,440,962 out of 521,076,696
Covered: 183,635,734 out of 521,076,696

Uncovered: 15,672,489 out of 34,663,348
Covered: 18,990,859 out of 34,663,348