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Oryza sativa Japonica Group vs Oryza sativa (Xian/Indica-2A var. Gobol Sail) Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza sativa (Xian/Indica-2A var. Gobol Sail) (Oryza sativa Indica Group, Os132424RS1) were extracted from their pairwise alignment in Ensembl Plants release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 26 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 4,672,929 out of 375,049,285
Covered: 370,376,356 out of 375,049,285

Uncovered: 171,033 out of 34,818,902
Covered: 34,647,869 out of 34,818,902
Oryza sativa (Xian/Indica-2A var. Gobol Sail)

Uncovered: 6,410,105 out of 392,847,014
Covered: 386,436,909 out of 392,847,014

Uncovered: 157,067 out of 41,956,946
Covered: 41,799,879 out of 41,956,946