In this section

Oryza sativa Japonica Group vs Oryza sativa (Xian/Indica-3B1 var. Khao Yai Guang) Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza sativa (Xian/Indica-3B1 var. Khao Yai Guang) (Oryza sativa Indica Group, Os127518RS1) were extracted from their pairwise alignment in Ensembl Plants release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 30 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 7,478,913 out of 375,049,285
Covered: 367,570,372 out of 375,049,285

Uncovered: 468,994 out of 34,818,902
Covered: 34,349,908 out of 34,818,902
Oryza sativa (Xian/Indica-3B1 var. Khao Yai Guang)

Uncovered: 13,215,273 out of 399,249,348
Covered: 386,034,075 out of 399,249,348

Uncovered: 676,577 out of 42,343,724
Covered: 41,667,147 out of 42,343,724