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Oryza sativa Japonica Group vs Oryza sativa (Xian/Indica-2B var. Larha Mugad) Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza sativa (Xian/Indica-2B var. Larha Mugad) (Oryza sativa Indica Group, Os125619RS1) were extracted from their pairwise alignment in Ensembl Plants release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 24 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 4,279,222 out of 375,049,285
Covered: 370,770,063 out of 375,049,285

Uncovered: 216,153 out of 34,818,902
Covered: 34,602,749 out of 34,818,902
Oryza sativa (Xian/Indica-2B var. Larha Mugad)

Uncovered: 4,707,973 out of 391,869,645
Covered: 387,161,672 out of 391,869,645

Uncovered: 192,491 out of 41,893,402
Covered: 41,700,911 out of 41,893,402