In this section

Oryza sativa Japonica Group vs Oryza sativa (circum-Aus1 var. N22) Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza sativa (circum-Aus1 var. N22) (Oryza sativa aus subgroup, OsN22RS2) were extracted from their pairwise alignment in Ensembl Plants release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 21 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 5,540,172 out of 375,049,285
Covered: 369,509,113 out of 375,049,285

Uncovered: 252,516 out of 34,818,902
Covered: 34,566,386 out of 34,818,902
Oryza sativa (circum-Aus1 var. N22)

Uncovered: 8,047,784 out of 388,175,468
Covered: 380,127,684 out of 388,175,468

Uncovered: 248,147 out of 42,158,175
Covered: 41,910,028 out of 42,158,175