In this section

Oryza sativa Japonica Group vs Oryza sativa (circum-Basmati var. ARC 10497) Synteny results

The syntenic regions between Oryza sativa Japonica Group (Oryza sativa Japonica Group, IRGSP-1.0) and Oryza sativa (circum-Basmati var. ARC 10497) (Oryza sativa aromatic subgroup, Os117425RS1) were extracted from their pairwise alignment in Ensembl Plants release 111. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 18 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Oryza sativa Japonica Group

Uncovered: 3,235,143 out of 375,049,285
Covered: 371,814,142 out of 375,049,285

Uncovered: 188,468 out of 34,818,902
Covered: 34,630,434 out of 34,818,902
Oryza sativa (circum-Basmati var. ARC 10497)

Uncovered: 3,682,317 out of 380,354,188
Covered: 376,671,871 out of 380,354,188

Uncovered: 135,367 out of 42,075,030
Covered: 41,939,663 out of 42,075,030