In this section

Medicago truncatula vs Cajanus cajan (pigeon pea) - GCA_000340665.1 Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Cajanus cajan (pigeon pea) - GCA_000340665.1 (Cajanus cajan, C.cajan_V1.0) were extracted from their pairwise alignment in Ensembl Plants release 109. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 74 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 389,396,627 out of 412,800,391
Covered: 23,403,764 out of 412,800,391

Uncovered: 46,901,350 out of 50,132,764
Covered: 3,231,414 out of 50,132,764
Cajanus cajan (pigeon pea) - GCA_000340665.1

Uncovered: 564,649,203 out of 592,816,859
Covered: 28,167,656 out of 592,816,859

Uncovered: 43,458,737 out of 46,457,444
Covered: 2,998,707 out of 46,457,444