In this section

Medicago truncatula vs Vigna unguiculata Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Vigna unguiculata (Vigna unguiculata, ASM411807v1) were extracted from their pairwise alignment in Ensembl Plants release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 61 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 231,554,439 out of 412,800,391
Covered: 181,245,952 out of 412,800,391

Uncovered: 25,919,023 out of 50,132,764
Covered: 24,213,741 out of 50,132,764
Vigna unguiculata

Uncovered: 347,791,440 out of 519,066,764
Covered: 171,275,324 out of 519,066,764

Uncovered: 18,916,541 out of 38,844,626
Covered: 19,928,085 out of 38,844,626