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Arabidopsis thaliana vs Arabis alpina Synteny results

The syntenic regions between Arabidopsis thaliana (Arabidopsis thaliana, TAIR10) and Arabis alpina (Arabis alpina, A_alpina_V4) were extracted from their pairwise alignment in Ensembl Plants release 107. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 28 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Arabidopsis thaliana

Uncovered: 103,463,280 out of 119,667,750
Covered: 16,204,470 out of 119,667,750

Uncovered: 28,475,266 out of 33,774,176
Covered: 5,298,910 out of 33,774,176
Arabis alpina

Uncovered: 272,928,800 out of 308,032,609
Covered: 35,103,809 out of 308,032,609

Uncovered: 21,379,328 out of 25,084,253
Covered: 3,704,925 out of 25,084,253