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Triticum aestivum vs Secale cereale Synteny results

The syntenic regions between Triticum aestivum (Triticum aestivum, IWGSC) and Secale cereale (Secale cereale, Rye_Lo7_2018_v1p1p1) were extracted from their pairwise alignment in Ensembl Plants release 106. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 1,249 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Triticum aestivum

Uncovered: 12,744,378,750 out of 14,547,261,565
Covered: 1,802,882,815 out of 14,547,261,565

Uncovered: 107,254,443 out of 133,674,966
Covered: 26,420,523 out of 133,674,966
Secale cereale

Uncovered: 5,162,494,579 out of 6,735,227,109
Covered: 1,572,732,530 out of 6,735,227,109

Uncovered: 26,316,052 out of 44,182,623
Covered: 17,866,571 out of 44,182,623