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Medicago truncatula vs Corylus avellana Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Corylus avellana (Corylus avellana, CavTom2PMs-1.0) were extracted from their pairwise alignment in Ensembl Plants release 106. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 87 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 378,820,618 out of 412,800,391
Covered: 33,979,773 out of 412,800,391

Uncovered: 45,300,961 out of 50,132,764
Covered: 4,831,803 out of 50,132,764
Corylus avellana

Uncovered: 327,773,273 out of 369,779,143
Covered: 42,005,870 out of 369,779,143

Uncovered: 25,702,933 out of 31,083,732
Covered: 5,380,799 out of 31,083,732