In this section

Zea mays vs Brachypodium distachyon Synteny results

The syntenic regions between Zea mays (Zea mays, Zm-B73-REFERENCE-NAM-5.0) and Brachypodium distachyon (Brachypodium distachyon, Brachypodium_distachyon_v3.0) were extracted from their pairwise alignment in Ensembl Plants release 106. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 137 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Zea mays

Uncovered: 1,923,585,151 out of 2,182,075,994
Covered: 258,490,843 out of 2,182,075,994

Uncovered: 33,728,078 out of 43,681,835
Covered: 9,953,757 out of 43,681,835
Brachypodium distachyon

Uncovered: 180,822,315 out of 271,163,419
Covered: 90,341,104 out of 271,163,419

Uncovered: 23,940,982 out of 39,007,317
Covered: 15,066,335 out of 39,007,317