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Medicago truncatula vs Ficus carica Synteny results

The syntenic regions between Medicago truncatula (Medicago truncatula, MedtrA17_4.0) and Ficus carica (Ficus carica, UNIPI_FiCari_1.0) were extracted from their pairwise alignment in Ensembl Plants release 105. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 91 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Medicago truncatula

Uncovered: 375,807,136 out of 412,800,391
Covered: 36,993,255 out of 412,800,391

Uncovered: 44,791,843 out of 50,132,764
Covered: 5,340,921 out of 50,132,764
Ficus carica

Uncovered: 293,114,762 out of 333,439,967
Covered: 40,325,205 out of 333,439,967

Uncovered: 29,638,082 out of 35,811,513
Covered: 6,173,431 out of 35,811,513