In this section

Zea mays vs Sorghum bicolor Synteny results

The syntenic regions between Zea mays (Zea mays, Zm-B73-REFERENCE-NAM-5.0) and Sorghum bicolor (Sorghum bicolor, Sorghum_bicolor_NCBIv3) were extracted from their pairwise alignment in Ensembl Plants release 105. We look for stretches where the alignment blocks are in synteny. The search is run in two phases. In the first one, syntenic alignments that are closer than 200 kbp are grouped. In the second phase, the groups that are in synteny are linked provided that no more than 2 non-syntenic groups are found between them and they are less than 3Mbp apart.

Configuration parameters

No configuration parameters are available.

Statistics over 214 synteny blocks

Genome coverage (bp) Coding exon coverage (bp)
Zea mays

Uncovered: 1,403,685,322 out of 2,182,075,994
Covered: 778,390,672 out of 2,182,075,994

Uncovered: 21,032,375 out of 43,681,835
Covered: 22,649,460 out of 43,681,835
Sorghum bicolor

Uncovered: 421,205,697 out of 708,735,318
Covered: 287,529,621 out of 708,735,318

Uncovered: 8,997,590 out of 39,785,927
Covered: 30,788,337 out of 39,785,927